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    Francois Serra
    @fransua
    that's funny chat to discuss ideas :)
    scriscio
    @scriscio
    Hi,
    I was interested in using TADbit. I was wondering if there was a sort of start-to-finish script where we could access the full functionality of TADbit, sort of like a template for processing samples.
    Francois Serra
    @fransua
    Hi,
    there is such a script for the detection of TADs and modeling part (model_and_analyze.py in the script folder. This script should also be in your PATH if you installed TADbit). There are not yet any script for the mapping of NGS reads, and the generation of interactions matrices.
    ... @scriscio sorry for the delay in answering, my notifications were turned off :(
    Bob-Yeah
    @Bob-Yeah
    Can TADbit do a whole genome modeling?
    Francois Serra
    @fransua
    Hi @Bob-Yeah , if you're thinking on a human-size genome. no :)
    Bob-Yeah
    @Bob-Yeah
    One more question: why do you use "scorei=eqvsi×dRMSDi/max(dRMSD)/(RMSDi/max(RMSD)) " in "cluster_models" as the score to do model clustering?
    Francois Serra
    @fransua
    This formula is used for two reasons, 1- increase the difference between model 2- and differentiate between mirror models
    depending on the type of analysis you may want to differentiate symmetric models into different clusters
    Daniel Doerr
    @danydoerr
    Hi, I'm somewhat struggeling in getting TADbit to run. I've successfully installed IMP, also the TADbit installation runs through and "python setup.py check" returns no errors/warnings. However, when I followed some steps in the documentation, I stumbled upon the following import "from pytadbit.imp.CONFIG", which fails because pytadbit does not contain an "imp" module. Do you folks have any idea what might have gone wrong?