These are chat archives for Bioinformatics-Support-Unit/best-practices

3rd
Jun 2015
Simon Cockell
@sjcockell
Jun 03 2015 09:35
Some issues for consideration
HISAT has documented problem with processed pseudogenes: https://twitter.com/notSoJunkDNA/status/605904572394041344/photo/1
Salmon has new release due (0.4.0), which apparently addresses some issues raised by my simulation & comparison with Kallisto https://github.com/COMBINE-lab/salmon/releases
My transcriptome simulation and tests are here: https://github.com/Bioinformatics-Support-Unit/transcriptome_quantification
Also, Salmon preprint due on 15th, apparently.
Andrew Skelton
@AndrewSkelton
Jun 03 2015 10:19
I've added in a folder for example code