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Repo info
    Simon Cockell
    Some issues for consideration
    HISAT has documented problem with processed pseudogenes: https://twitter.com/notSoJunkDNA/status/605904572394041344/photo/1
    Salmon has new release due (0.4.0), which apparently addresses some issues raised by my simulation & comparison with Kallisto https://github.com/COMBINE-lab/salmon/releases
    My transcriptome simulation and tests are here: https://github.com/Bioinformatics-Support-Unit/transcriptome_quantification
    Also, Salmon preprint due on 15th, apparently.
    Andrew Skelton
    I've added in a folder for example code