I am trying to do a test run in conda using:
cellfinder -s C:\Users\Sthita PC\cellfinder_sg\sg.tif -b C:\Users\Sthita PC\cellfinder_bg\bg.tif -o C:\Users\Sthita PC\cellfinder_out -x 2.231 -y 2.231 -z 25
but repeatedly getting the message
cellfinder: error: unrecognized arguments: PC\cellfinder_bg\bg.tif PC\cellfinder_out
Could you kindly point out if I am making any obvious mistake?
Hi, thank you for your harwork. I may have a problem that i dont know how to solve.
After the detection of cell and at the beginning of the classification the program stops and it tell me this :
File "c:\users\guill\miniconda3\envs\cellfinder\lib\site-packages\h5py_hl\files.py", line 173, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
File "h5py_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
File "h5py\h5f.pyx", line 88, in h5py.h5f.open
OSError: Unable to open file (truncated file: eof = 16910353, sblock->base_addr = 0, stored_eof = 184831728)
what should I do ? thank you !
brainglobeand the tool you're asking about, e.g.
cellfinder. This Gitter channel will no longer be monitored. Thanks!