Jbrowse updated to 1.15.0. Gene link outs to Ensemble plants, easy gene sequence extraction via right click menu. Among others.
Rad Suchecki
@rsuchecki
How close are we to the full-length pseudomolecule version of DAWN? @nathanhaigh
Nathan S. Watson-Haigh
@nathanhaigh
@rsuchecki it's in the works - Need to wait till the paper is out and then put in place a mechanism to redirect URLs for the "part" coordinates to the full length pseudomolecules.
Rad Suchecki
@rsuchecki
:+1:
Juan Carlos
@jcsanchez2
nathan you around?
Juan Carlos
@jcsanchez2
i just read your email, any update from them?
Nathan S. Watson-Haigh
@nathanhaigh
Nope
which tracks you having problems with @jcsanchez2 ?
Juan Carlos
@jcsanchez2
from this jbrowse-bleeding , Lancer and Mace coverage work ok, but any other track for Lancer or Mace dont work
Lancer:Reads, SNP coverage, Variant density and Variants
For variant density seems that just the file is missing
for the others have the message i told you in the email "incorrect header check"
Nathan S. Watson-Haigh
@nathanhaigh
Try clearing your cache as I have it working here
All the file movements may have caused some cache issues
Juan Carlos
@jcsanchez2
nope already did that and get the same...
Nathan S. Watson-Haigh
@nathanhaigh
Hmm, seems to be chromosome specific
goto 1A and things are fine. I'll have to wait for ITDS to reboot the VM so SSH access is restored.
Juan Carlos
@jcsanchez2
ah yes, just took a look and all is fine till 2A, after that nothing worked
Nathan S. Watson-Haigh
@nathanhaigh
I'll just have to wait on ITDS :(
Nathan S. Watson-Haigh
@nathanhaigh
Itds reboot was successful. However, i want able to test if it fixed your problem @jcsanchez2. Can you test?