Where communities thrive


  • Join over 1.5M+ people
  • Join over 100K+ communities
  • Free without limits
  • Create your own community
People
Repo info
Activity
  • 10:52
    kyostiebi assigned #102
  • 10:52
    kyostiebi opened #102
  • 10:51

    kyostiebi on Issue101

    tmp (compare)

  • May 26 15:30

    kyostiebi on Issue101

    init commit (compare)

  • May 26 12:45
    kyostiebi commented #100
  • May 26 12:43
    kyostiebi synchronize #100
  • May 26 12:43

    kyostiebi on Issue99

    Moved addFeatureToDb -method to… (compare)

  • May 26 10:07
    kyostiebi synchronize #98
  • May 26 10:07

    kyostiebi on Issue97

    Simplified reading of the last … (compare)

  • May 25 15:43
    garrettjstevens synchronize #98
  • May 25 15:43

    garrettjstevens on Issue97

    Add possible incomplete line ha… (compare)

  • May 25 14:47
    kyostiebi synchronize #98
  • May 25 14:47

    kyostiebi on Issue97

    tmp commit added check if seq ref info or … (compare)

  • May 24 23:38
    garrettjstevens commented #101
  • May 24 23:37

    garrettjstevens on 101-add-assembly-ui

    Add basic outline for add assem… (compare)

  • May 24 23:36

    garrettjstevens on 101-add-assembly-ui

    (compare)

  • May 24 23:35
    garrettjstevens assigned #101
  • May 24 23:35
    garrettjstevens milestoned #101
  • May 24 23:35
    garrettjstevens opened #101
  • May 24 22:46
    garrettjstevens commented #100
Nathan Dunn
@nathandunn
can I release any unassociated elastic IPs?
Robert Buels
@rbuels
are there any?
Nathan Dunn
@nathandunn
about 4 or 5
I’m not sure why it won’t let me create any more VPC elastic IPs
can you create any?
Robert Buels
@rbuels
let's pair on it, i'll send you the meet link
Nathan Dunn
@nathandunn
K
Nathan Dunn
@nathandunn
I added instructions for neo4j apollo and the client library here: https://github.com/GMOD/Apollo3Server#requirements
note that the functional tests are there to replace the integration-tests
Nathan Dunn
@nathandunn
Nathan Dunn
@nathandunn
jar tvf Apoll2.war
Nathan Dunn
@nathandunn
./grailsw run-app
cd apollo-gmod-js
rm -rf pwd/temp-apollo-test-data
cp -r pwd/test-data pwd/temp-apollo-test-data
Robert Buels
@rbuels
What are all these snippets
Nathan Dunn
@nathandunn
oh . . . are pair programming with @peterkxie and @garrettjstevens
I guess we coudl do that offline
Nathan Dunn
@nathandunn
@garrettjstevens / @peterkxie we should probably update the AMI (after reading the Apollo group) for Apollo 2.6.4 . . its pretty easy. Better yet, I’ll send out instructions and you can do it (or I can just do it). Let me know what makes the most sense.
Nathan Dunn
@nathandunn
I may have to fix the AMI memory settings, so we’ll see
Nathan Dunn
@nathandunn
@rbuels / @garrettjstevens / @peterkxie https://upenn.zoom.us/j/92729464470#success
should have at least one of you here
Robert Buels
@rbuels
What meeting is that
Is there a calendar invite
Nathan Dunn
@nathandunn
VeuPathDB . . .
Robert Buels
@rbuels
I have a conflict this morning, can’t make it. maybe I missed the email thread with this date and time? Maybe we can schedule something next week to follow up on this
Garrett Stevens
@garrettjstevens
There is a meeting now? Sorry, I can't make it, either.
Nathan Dunn
@nathandunn
@garrettjstevens / @peterkxie the https://github.com/GMOD/Apollo3Server build works now. bintray was deprecated as a host for jfrog. Let me know if you have any troubles.
Also, there is a meeting next Tuesday at 8 am PT.
invites will go out. Let me know if that time doesn’t work.
Robert Buels
@rbuels
That time works for me
Nathan Dunn
@nathandunn
FYI if you want a pure micronaut / swagger installation, I started this branch: https://github.com/GMOD/Apollo3Server/tree/micronaut-swagger
Garrett Stevens
@garrettjstevens
That time works for me, too. Also, I can confirm ./grailsw test-app -unit in Apollo3Server works for me, now.
Robert Buels
@rbuels
Nice
Nathan Dunn
@nathandunn
:+1:
A little more than what we or most curators want, but definitely worth taking a look at
Nathan Dunn
@nathandunn
./gradlew gwtc
./gradlew devmode
Nathan Dunn
@nathandunn
FYI GMOD/Apollo#2618 ready for review @peterkxie @garrettjstevens
Nathan Dunn
@nathandunn
GMOD/Apollo#2619 ready for review @peterkxie @garrettjstevens
Nathan Dunn
@nathandunn
@peterkxie / @garrettjstevens / @rbuels not sure long-term what you guys are doing, but I’ve been pretty impressed with nestjs + graphql. I like the code-first approach (very similar to running an ORM in some ways, but without the overhead of bound objects). Coupling with neo here: https://medium.com/@faaizhussain/nestjs-graphql-neo4j-1e3e6e552a80 kind of interseting / FYI
Robert Buels
@rbuels
i know garrett was looking at how graphql APIs seemed to play well with neo4j
Garrett Stevens
@garrettjstevens
Yeah, I've looked at neo4j and graphql, although I looked at a different NPM package (neo4j-graphql-js, which is made by the neo4j team). nestjs is new to me, though, and it seems like a really nice node framework.
Robin Haw
@hawrobin
Neo4j has been picked up and well used by a number of Bioinformatics projects, including Reactome. Supported by a number of different languages, tools, etc. GraphQL is also really interesting opportunity. One of our GSoC projects last year was to create GraphQL API for the Reactome Neo4j. Lincoln like this approach!
Nathan Dunn
@nathandunn
yeah, I think there is a plugin for neo4j to automatically generate a graphql schema, but you could also generate classes that you will be writing domains out and the graphql schema gets automatically generated (learning about code-first versus schema first)
@hawrobin agreed, that IS a really nice approach