If you want to post here you can too
dammit. I hate js regular expressions. Why would this not match
var matches = dbxref.match(/GeneID:(\d+)/ ) when the contents of dbxref is GeneID:43740568? Live example when clicking on gene in http://dev.wormbase.org:9018/jbrowse/?data=data%2FSARS-CoV-2&loc=NC_045512.2%3A1..29903&tracks=Genes&highlight=
var dbxref = 'GeneID:43740578'; console.log(dbxref); var matches = dbxref.match(/GeneID:(\d+)/ ); console.log(matches); if(Array.isArray(matches)) { dbxref=matches[1];}
that passes
something else happenin
it looks like it should be working to me but i can see that ya, gets null instead of a match
Not working much today. I’m quite sure I have vivid-19 today; no breathing issues yet though. The conjunctivitis is messing with my vision so I don’t really want to be reading on a screen too much today. @nathandunn if you don’t mind, please update the container on the covid19 server from dockerhub. Thanks
@scottcain is it true you can’t taste?
@scottcain and take care of yourself.
I’m going to research how to automatically push changes to AWS when docker is updated. We do this for other projects.
It is all updated @scottcain
I think they said “loss of smell” https://www.nytimes.com/2020/03/22/health/coronavirus-symptoms-smell-taste.html but who knows
hopefully you’re just regular sick
(but not very sick).
Let me know if the updates look correct
a proverbial russian docker doll
Got a weird message in the the jbrowse mailing list moderation queue:
JBrower download is very slow,please send to me the new version to my email! That’s the entirety of the message. Should I bother to let it through and ask what they mean? It’s from a 163.com address, which is frequently used by spammers but I think has legitimate users, particularly in China.
A few hours ago, Angela says to me “have you thought about the fact that you’re following exactly the same trajectory as me but you get everything worse?” I thanked her so much for the food for thought. Here’s hoping I don’t need anything stronger than an inhaler in a few days :-)
Hello everyone
I am Alankrit Gupta 3rd year student of IP University. I went through the idealist of the GSoC 2020 and saw the idea "JBrowse 2 - Phylogenetic tree viewer"
I have worked on MERN stack. I have experience in technologies like redux, PWA , Puppeteer, Redis etc.
After going through the idea I think that tree implementation could be done well with D3.js
What else are the prerequisites I need to know about the project???
and How should I get started??
I am Alankrit Gupta 3rd year student of IP University. I went through the idealist of the GSoC 2020 and saw the idea "JBrowse 2 - Phylogenetic tree viewer"
I have worked on MERN stack. I have experience in technologies like redux, PWA , Puppeteer, Redis etc.
After going through the idea I think that tree implementation could be done well with D3.js
What else are the prerequisites I need to know about the project???
and How should I get started??
We're an open source genome browser project
We are creating a version 2 of our project with react currently
And we are aiming to support new types of visualizations like phylogenetic tree
So that is our summary. We find that d3 and react often don't play well because d3 is direct Dom manipulation and react is vdom
You can do d3 in react but you have to "fully do the visualization in d3" you can't really mix
We also do not have a server side component to our app it is just client side js