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  • Jan 31 2019 22:37

    bebatut on gh-pages

    Update on: Thu Jan 31 22:36:58 … (compare)

  • Jan 31 2019 22:00

    erasche on master

    Reports fix. Clear up issue in Galaxy docker… More reports fixes... and 1 more (compare)

  • Jan 31 2019 22:00
    erasche closed #1237
  • Jan 31 2019 22:00
    erasche commented #1237
  • Jan 31 2019 21:33
    jmchilton synchronize #1237
  • Jan 31 2019 21:01
    erasche labeled #1239
  • Jan 31 2019 21:01
    erasche opened #1239
  • Jan 31 2019 21:00
    natefoo opened #1238
  • Jan 31 2019 20:56
    jmchilton opened #1237
  • Jan 31 2019 20:17

    bebatut on gh-pages

    Update on: Thu Jan 31 20:17:17 … (compare)

  • Jan 31 2019 19:44

    erasche on master

    fix typos Merge pull request #1236 from g… (compare)

  • Jan 31 2019 19:44
    erasche closed #1236
  • Jan 31 2019 19:44
    martenson opened #1236
  • Jan 31 2019 19:44

    martenson on martenson-patch-2

    fix typos (compare)

  • Jan 31 2019 19:23

    bebatut on gh-pages

    Update on: Thu Jan 31 19:23:39 … (compare)

  • Jan 31 2019 19:06

    Slugger70 on master

    import some notes fix username and 1 more (compare)

  • Jan 31 2019 19:06
    Slugger70 closed #1234
  • Jan 31 2019 19:04
    erasche review_requested #1234
  • Jan 31 2019 19:03
    erasche synchronize #1234
  • Jan 31 2019 19:03
    erasche unlabeled #1234
works for me
do you see a warning?
Yvan Le Bras
@yvanlebras
nope
arf ;)
because of the subdomain !!!
Björn Grüning
@bgruening
yes
we don't have those certificates for all subdomains
sorry
Yvan Le Bras
@yvanlebras
"ah ba bravo" as we say in France ;)
Niall Beard
@njall
Hi. I wanted to reference GTN in a paper I'm writing about Bioschemas Training specs. Is there a publication I can reference? I spotted this one linked on the GTN site: https://www.sciencedirect.com/science/article/pii/S2405471218302308?via%3Dihub Is this the main one to cite?
Saskia Hiltemann
@shiltemann
@njall yep, that's the one
Niall Beard
@njall
Thanks :)
Björn Grüning
@bgruening
@tnabtaf new tutorial about singlecell: galaxyproject/training-material#1698
also the ATAC seq tutorial was updated
Dave Clements
@tnabtaf
Excellent! Will tweet, probably tomorrow.
And, while I am here:
  1. Nominate Training Topics by January 17
  2. We need your input!
    Both about BCC2020
Dave Clements
@tnabtaf

Hey all

  1. Nominate Training Topics by January 17
  2. We need your input!

the 2nd item closes tomorrow.

And, it's newsletter time. I'm going to start walking through training updates, but please feel free to tell me about them too.
And, Happy New Year!
Yvan Le Bras
@yvanlebras
Happy new year Dave, GTN !
Dave Clements
@tnabtaf
Here's the recent GTN activity I found. Will likely publish on Wednesday
selten
@selten
@tnabtaf For the 2020 Galaxy Admin Training, does that include a tour of the supercomputer or would someone have to make reservations for a tour themselves?
Hans-Rudolf Hotz
@hrhotz
@tnabtaf what about the "Survey about Galaxy for training and Galaxy Training Materials" should this be included in the January newsletter?
Helena Rasche
@hexylena
:+1: good thinking @hrhotz
Dave Clements
@tnabtaf
@selten: I don't think it does. However, you could suggest this as an activity to the local organizer: Salvador Capella Gutierrez
@hrhotz @hexylena The newsletter went out this morning.
But, because of the wonders of the web, we can edit the news even after it goes out.
I need a link though (can't find one)
Helena Rasche
@hexylena
One second
Dave Clements
@tnabtaf
Thanks
Helena Rasche
@hexylena
@tnabtaf would you have 5 minutes to check over it first? To see if it is suitable?
Dave Clements
@tnabtaf
Yes!
And of course it is suitable!
Helena Rasche
@hexylena
Bad phrasing, more, will it be ok / not too burdensome for respondents
Dave Clements
@tnabtaf
Published. See here and please let me know if anything needs to change.
And a separate news item will likely follow in a few days
Helena Rasche
@hexylena
Thanks so much!
That looks perfect
Hans-Rudolf Hotz
@hrhotz
@hexylena @tnabtaf :thumbsup: brilliant
Helena Rasche
@hexylena

Hi @/all

Do you use Galaxy for Training? Then the Galaxy Training Network wants your feedback. Please take a few minutes to let us know about your training experiences. The survey should take no more than 10 minutes and will help us prioritise improvements to the training materials. We're currently focused on making it eaiser to prepare and give trainings :mortar_board::tada:

Björn Grüning
@bgruening
@tnabtaf for your list: galaxyproject/training-material#1548
Delphine Guillotin
@DelphineGuillo6_twitter
Hi, I'm following the "Reference-based RNA-Seq data analysis" training. I'm stuck because it says to use tools that I can't find on Galaxy: Table Compute (to calculate z-scores) and pathview (to visually represent Kegg pathways). Online it says that I need to download the tools from Galaxy Tool Shed, but I don't find how to upload them. Could someone help please? Many thanks!
Nicola Soranzo
@nsoranzo
@DelphineGuillo6_twitter I'd suggest you to use https://usegalaxy.eu/ where you could find all the tools already installed.
Delphine Guillotin
@DelphineGuillo6_twitter
@nsoranzo Thanks! I'm trying to get my history from .org to .eu now so I don't have to start again from scratch.
Nate Coraor
@natefoo
For the record, I've installed Table Compute on usegalaxy.org
Wolfgang Maier
@wm75
:tada:
Nate Coraor
@natefoo
And now thanks to @mvdbeek we are installing all IUC tools that are on usegalaxy.eu but not usegalaxy.org.
Björn Grüning
@bgruening
Cooli!