I am currrently working on galaxyproject/training-material#1290
and I also planned today to fix some bugs in planemo for training
... and I'll adapt the somatic variant calling tutorial a bit to avoid redundancy in the variant-analysis section
Hi I'm still working on our ewas tutorial and but unfortunately I have experienced some problems with toolshed atm galaxyproject/training-material#1377
I am starting with the slides though
btw, the 2nd call is be in 10mn
enjoy the call!
sorry I couldn't make those calls either but have followed @erasche's example and put our most recent course's feedback here in case it's of interest to others https://github.com/galaxyproject/training-material/issues/989#issuecomment-493642457. It includes some thoughts on improving the material that we used that I'll work on when I get a chance
Hey all -- thoughts about best way to do this? Get the tool changed or update the tutorial? https://github.com/galaxyproject/training-material/issues/989#issuecomment-494162268
Posting here since want to share the link back with a tutorial user who reported the problems at Galaxy help
Another idea for the https://galaxyproject.github.io/training-material/ site itself -- any thoughts on building a search function into it? I end of using google a lot to find which tutorials have certain tools, datatypes, and other various operations. Going back to use the search function in https://galaxyproject.org/search/ isn't obvious for users, and can produce a lot of noisy results.
I can make that into a ticket. just didn't want to rehash something that is already planned for
or discarded as a terrible idea :)
I guess updating the tutorial with a tip, to make sure the fastq tpye does match is a good way
it uses TeSS to search the site for terms, it probably won't find tools currently.
We can look at exposing that data in some way TeSS can consume
I guess we can put a 'search' icon that expands but
see github.com for a company with a budget dedicated to css/js as well, unfortuntely.
I'll see what I can do?
"train the trainer ASAP!!!" :)
Lol, yeah, ok, not an obvious place maybe. We opened an issue for it galaxyproject/training-material#1389 :)
maybe the tool could redetect the fastq type when creating the output? or maybe just needs some help text -- eg: "use edit attr > redetect". I like the first one better, less steps for the user
@bgruening Feedback from the end user running the bamtools extract tool and getting "fastq" instead of "fastqsanger" as the output (there data is fastqsanger). They do have an practical point here -- re-detecting datatype is not a batch operation -- making this all very tedious https://help.galaxyproject.org/t/convert-from-bam-to-fastq/1318/11?u=jennaj