Thanks
(you can of course! but since you've already got this VM setup, it would take less time to just make the configuration use a different port for writing the tutorial, and we can change it after.)
Good morning. I used 55k as Port but it does not appear from outside:
$ nmap gat-79.be.training.galaxyproject.eu
Starting Nmap 7.91 ( https://nmap.org ) at 2021-06-18 09:24 CEST
Nmap scan report for gat-79.be.training.galaxyproject.eu (193.190.80.99)
Host is up (0.022s latency).
rDNS record for 193.190.80.99: t1cl0128.guest.ugent.be
Not shown: 992 filtered ports
PORT STATE SERVICE
22/tcp open ssh
80/tcp open http
113/tcp closed ident
443/tcp open https
2000/tcp open cisco-sccp
5060/tcp open sip
8008/tcp open http
8080/tcp open http-proxy
Nmap done: 1 IP address (1 host up) scanned in 4.89 secondsWhen I try to connect with lftp from outside to the port I set (55k). I get a Connection time out. I don't know anything about port but I have the feeling that I need a command port smaller than 1023.
less than 1024 shouldn't matter, the only thing special there is they require root to access.
there's two levels of firewalling going on; one from the cloud, and then one from their network guys on top of it.
the cloud we can change. The network folks, no. We will not be getting any more ports.
it doesn't look like it restarted by the systemd times
ubuntu@gat-79:/srv/galaxy$ systemctl status galaxy
● galaxy.service - Galaxy
Loaded: loaded (/etc/systemd/system/galaxy.service; enabled; vendor preset: enabled)
Active: active (running) since Fri 2021-06-18 07:53:07 UTC; 18min ago
did it not trigger a restart when you changed the conf file?
anyway
I don't know, unexpected!
Just in case...
$ sudo systemctl restart galaxy
try setting the other vars? ftp_upload_site? maybe one of those triggers it
It worked.
I think the doc needs to be updated because it is misleading.
1 reply
$ curl --silent https://gat-79.be.training.galaxyproject.eu/api/configuration -k | jq | grep ftp
"ftp_upload_site": null,ftp_upload_site in the client dir
very misleading!
not sure if you're familiar with how the config schema has changed in recent years, but in case anyone else isn't, now we update
lib/galaxy/webapps/galaxy/config_schema.yml and run make config-rebuild to keep galaxy.yml.sample up to date.
@lldelisle: this tutorial looks fantastic, I did not expect this!
I'll review it today then
"first version", pff, this is basically mergeable as is :)
I feel like I am filling this chat... Sorry.
Why the tools are clickable from GTN in usegalaxy.eu/org/.org.au and not .be/my local instance? Is there a variable to set?
Why the tools are clickable from GTN in usegalaxy.eu/org/.org.au and not .be/my local instance? Is there a variable to set?
it should be mentioned at the bottom of the frame "Click to run unavialble" or so