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  • Jan 31 2019 22:37

    bebatut on gh-pages

    Update on: Thu Jan 31 22:36:58 … (compare)

  • Jan 31 2019 22:00

    erasche on master

    Reports fix. Clear up issue in Galaxy docker… More reports fixes... and 1 more (compare)

  • Jan 31 2019 22:00
    erasche closed #1237
  • Jan 31 2019 22:00
    erasche commented #1237
  • Jan 31 2019 21:33
    jmchilton synchronize #1237
  • Jan 31 2019 21:01
    erasche labeled #1239
  • Jan 31 2019 21:01
    erasche opened #1239
  • Jan 31 2019 21:00
    natefoo opened #1238
  • Jan 31 2019 20:56
    jmchilton opened #1237
  • Jan 31 2019 20:17

    bebatut on gh-pages

    Update on: Thu Jan 31 20:17:17 … (compare)

  • Jan 31 2019 19:44

    erasche on master

    fix typos Merge pull request #1236 from g… (compare)

  • Jan 31 2019 19:44
    erasche closed #1236
  • Jan 31 2019 19:44
    martenson opened #1236
  • Jan 31 2019 19:44

    martenson on martenson-patch-2

    fix typos (compare)

  • Jan 31 2019 19:23

    bebatut on gh-pages

    Update on: Thu Jan 31 19:23:39 … (compare)

  • Jan 31 2019 19:06

    Slugger70 on master

    import some notes fix username and 1 more (compare)

  • Jan 31 2019 19:06
    Slugger70 closed #1234
  • Jan 31 2019 19:04
    erasche review_requested #1234
  • Jan 31 2019 19:03
    erasche synchronize #1234
  • Jan 31 2019 19:03
    erasche unlabeled #1234
Helena Rasche
@hexylena:matrix.org
[m]
regex is a tough interface for the rule builder :/
Tomas
@TKlingstrom
Adding column A (ie the numbers assigned to dataset by Galaxy) solves the issue of requiring a unique identifier but also means that the number of the file becomes the name of each individual dataset
And reusing the rule I just made does not show any datasets now
wm75 (Wolfgang Maier)
@wm75:matrix.org
[m]
Can you just copy/paste the rule json here?
Tomas
@TKlingstrom
But now I got a "big" ruleset that works and tonight I should hopefully be able to adapt it better. So now I need to go back to parenting duties, thanks a lot for the help.
Björn Grüning
@bgruening
@TKlingstrom btw since you had problems with GTN setup, there is now a fancy online interface where you can look at your changes online.
@bebatut and @hexylena:matrix.org might know more
Helena Rasche
@hexylena:matrix.org
[m]
gitpod, yes.
Tomas
@TKlingstrom
Awesome
wm75 (Wolfgang Maier)
@wm75:matrix.org
[m]
Ah, it's still like this in the rule-based upload dialog exclusively.
It's that "Play" button that you need to click.
Tomas
@TKlingstrom
Ah thanks
Tomas
@TKlingstrom
Also just realize that I can use the rules based uploader to pull files between histories, this will be useful
Yvan Le Bras
@yvanlebras
Hi GTN
Hope all is ok on your sides
A question... is there any "statistics" on the number of people looking at each tutorial per... month / year .. something like that ?
available on the extra menu
and even per tutorial
Helena Rasche
@hexylena:matrix.org
[m]
Yvan Le Bras
@yvanlebras
ouahouhou ! So amazing!!! Sorry to 1/ not seeing this devlopment and 2/ not seing it lokking at the website !
3 replies
maryamkalantari
@maryamkalantari
Hello everyone,
could you help me please,
why I get error in performing staramr tool for identification of AMR genes in Genome Assembly of MRSA tutorial.
Thanks a lot in advance.
8 replies
Ruddhida
@Ruddhida
Hi.. has anyone worked with .ab1 files in the galaxy?
Helena Rasche
@hexylena:matrix.org
[m]
TIL man gittutorial and man giteveryday exist for helping folks learn git
CozyDino
@CozyDino
Hello there. I want to convert a tif image file to a png image file as requested on this tutorial : https://training.galaxyproject.org/training-material/topics/imaging/tutorials/imaging-introduction/tutorial.html . Do you have any tips
4 replies
maaryaam-gh
@maaryaam-gh
Hi
When using the Hyperparameter search tool to analyze DNA methylation dataset in Tutorials: Age prediction using machine learning, its output in the story turns red.
This is while I do all the steps of using this tool according to its training
What is the cause?
Please help me
Saskia Hiltemann
@shiltemann
image.png
@maryamkalantari screenshot would not go in the thread for some reason, but here is where you can find the list of supporting Galaxies of a tutorial ^
maryamkalantari
@maryamkalantari
@shiltemann Thanks a lot, I appreciate your help
Dave Clements
@tnabtaf:matrix.org
[m]

Hi All, the October Papercuts CoFest is this Thursday, running all day, from Sunrise in Brisbane to Sunset in Portland.
The October event will be different from previous events:

Questions? Please let me know. Dave C

Ana Sosa
@AnaSF_gitlab
Hello, is someone else having issues executing tasks in Galaxy Belgium server?
Nicola Soranzo
@nsoranzo:matrix.org
[m]
Ping @ieguinoa
4 replies
Ollie White
@Ollie_W_White_twitter
image.png
Hello, I have installed a local galaxy server and I am trying to run the mitos2 annotation tool. It relies on a reference dataset which I have also intalled, however MITOS2 can't seem to find the the reference data that I have installed. As admin, I presume there was a step I have missed? Does anyone have any suggestions? See screen grab attached. Best wishes, Ollie
M Bernt
@bernt-matthias:matrix.org
[m]
@Ollie_W_White_twitter: I can have a look
Busy for the next hour .. but I'm pretty sure I can help .. since I'm the autor of MITOS :)
Ollie White
@Ollie_W_White_twitter
Thanks @bernt-matthias:matrix.org
Hope I haven't missed something simple with my installation
M Bernt
@bernt-matthias:matrix.org
[m]
@Ollie_W_White_twitter: have you used the data manager to install the reference data?
Ollie White
@Ollie_W_White_twitter
image.png
Hi @bernt-matthias:matrix.org, I installed under the "admin" tab and "Install and Uninstall"
M Bernt
@bernt-matthias:matrix.org
[m]
@Ollie_W_White_twitter: then you need to run the data manager .. you find it in the admin menu .. Local data
1 reply
M Bernt
@bernt-matthias
@Ollie_W_White_twitter is the dependency of the tool installed? This needs to be triggered manually sometimes.
Which reminds me that conda had problems resolving the mitos requirements lately. I was working on this, but got distracted.
If this is the case (check the logs), find the conda create... command in the logs and try to use mamba instead of conda.
Ann Vuyanzi
@annvuyanzi
Greetings all. I am Ann .I am new to this platform. Interested in finding a mentor for guidance in order to make contribution for internship that is starting December.
mariipia10
@mariipia10
@annvuyanzi Hi Ann, there is a specific gitter chat for Outreachy, check here https://gitter.im/galaxyproject/Outreachy and introduce yourself there! Every outreachy participant and mentors are over there :)
Sang Chul Choi
@goshng
Is there a tutorial to add translation of galaxy training material?
2 replies