bgruening on tmgowan-flashlfq
bgruening on master
Modify for new FlashLFQ release… new test data for new version Merge pull request #339 from ga… (compare)
tmcgowan on tmgowan-flashlfq
Modify for new FlashLFQ release… new test data for new version (compare)
bgruening on unipept4.0
jj-umn on master
unipept version 4.0 Currently … unipept.py - best_match of tryp… Remove extraneous text and 2 more (compare)
Has anyone encountered Olson database or Timezone issue with R - tidyverse library in Galaxy. I am seeing this error:
Error: Unknown TZ UTC
In addition: Warning message:
In OlsonNames() : no Olson database found
I also used "tzdata" in XML wrapper requirements, but it still didn't help. Please suggest. Thanks!
Hi everyone, I installed msconvert from the toolshed, I use the following job_conf.xml file in order to run it with singularity (using the docker image defined in the tool requirements):
<?xml version="1.0"?> <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). --> <job_conf> <plugins> <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> </plugins> <destinations default='singularity_local'> <destination id="local" runner="local"/> <destination id="singularity_local" runner="local"> <param id="singularity_enabled">true</param> </destination> <destination id="docker_local" runner="local"> <param id="docker_enabled">true</param> </destination> </destinations> </job_conf>
I got the following error :
FATAL: while parsing bind path: wrong bind syntax: <path>/galaxy:<path>/galaxy:rw
Summary of Galaxy Mass Spectrometry October 15th meeting.
1) Metabolomics researchers - please respond to Doodle survey for a bi-monthly meeting: https://doodle.com/poll/rbemey7afzznf37g#calendar
2) Vijay Nagampalli (Blankenberg Lab) presented on Mass Spectrometry research tools needs.
3) Next Galaxy meetings –
a) Proteomics 26th November 2020 and January 7th 2021 at 1 PM GMT
b) Mass Spectrometry February 18th, 2021 at 1 PM GMT.
4) Details of prior meetings at: http://z.umn.edu/celestialmasses