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  • Oct 22 2018 21:12

    dimus on v4.0.3

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  • Oct 22 2018 21:12

    dimus on master

    v 4.0.3 gems update (compare)

  • Sep 18 2017 08:28

    dimus on v4.0.2

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  • Sep 18 2017 08:28

    dimus on master

    add span for resolution (compare)

  • Sep 17 2017 18:57

    dimus on master

    make rubocop happy (compare)

  • Sep 17 2017 14:24

    dimus on v4.0.1

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  • Sep 17 2017 14:24
    dimus closed #43
  • Sep 17 2017 14:24

    dimus on master

    Fix #43 partially The idea was… (compare)

  • Sep 14 2017 22:19

    dimus on 43-unify-resolution-injestion

    wip (compare)

  • Sep 14 2017 21:47

    dimus on 43-unify-resolution-injestion

    wip (compare)

  • Sep 13 2017 22:02

    dimus on 43-unify-resolution-injestion

    Fix #43 unify injection and res… (compare)

  • Sep 13 2017 21:30

    dimus on 43-unify-resolution-injestion

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  • Sep 13 2017 21:26
    dimus opened #43
  • Sep 13 2017 20:20

    dimus on v4.0.0

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  • Sep 13 2017 20:20

    dimus on 42-better-eta

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  • Sep 13 2017 20:20
    dimus closed #42
  • Sep 13 2017 20:20

    dimus on master

    Fix #42 - better speed estimati… (compare)

  • Sep 12 2017 22:16

    dimus on 42-better-eta

    wip (compare)

  • Sep 12 2017 21:46

    dimus on 40-concurrency

    (compare)

  • Sep 12 2017 21:45

    dimus on 42-better-eta

    Fix #42 - better speed estimati… (compare)

Dmitry Mozzherin
@dimus
Looks like gnfinder-plus needs to have AGPL license, another good reason to keep gnfinder and gnfindef-plus separate
Harsh Zalavadiya
@harshzalavadiya
v1.0.0 was given just because i was just trying out for fun and wanted to trigger CI build, as of now this repo under @harshzalavadiya is completely recycable and git history will be removed if we decide to use this repo so please ignore version or commits as of now :P
Harsh Zalavadiya
@harshzalavadiya
I also found one more library https://github.com/sajari/docconv (MIT License) so we can avoid AGPL and this might ease it for everyone incl. for the folks who uses it for commercial usage, and also has a optional https://github.com/otiai10/gosseract support and exactly what we need, I have updated repo that uses docconv now https://github.com/harshzalavadiya/gnfinder-plus, also I have started using proper sementic releases from now on
Dmitry Mozzherin
@dimus
@harshzalavadiya great news! Can you investigate if there is a difference in handling a 2-column PDFs by either unipdf or docconv? If one of them supports 2 column layouts, and other does not, I think it is more important than AGPL license. Most tools do not support 2 columns sadly.
Dmitry Mozzherin
@dimus
@harshzalavadiya looks like docconv is a wrapper to pdf2text command line tool, which means an introduction of an external dependency that has to be installed independently of gnfinder-plus. Because of that, I would say your unipdf solution has an advantage over docconv solution.
I added info about docconv and gnfinder-plus to https://github.com/gnames/gnfinder/wiki/RFC-for-%22gnfinder-plus%22-project
Dmitry Mozzherin
@dimus
@gdower, @mju looks like symposia at TDWG is very collection oriented, and the work on CoL-BHL integration does not fit. However there is a plenary section that seem to fit this work, should we write and abstract to fit this section? https://www.tdwg.org/conferences/2020/session-list/#pd01%20avenues%20into%20integration:%20communicating%20taxonomic%20intelligence%20from%20sender%20to%20recipient
Dmitry Mozzherin
@dimus
My understanding it is more about what Nico Franz is doing, however I think taxonomic intelligence has a broader sense, like 'Animal', 'Bear' 'Ursus arctos', 'Ursus arctos L. 1758', 'Ursus arctos L. 1758 sensu A.B. C' all carry some taxonomic inteligence and their meaning would significantly shift depending on a context
Debbie Paul
@debpaul
Hi all, if you can't find a good fit, do submit to open, and we can then see after all talks are in, where it might fit.
Dmitry Mozzherin
@dimus
thanks @debpaul
Matt
@mjy
@dimus SYM09 Technical and standards implications in data liberation and semantic publishing for biodiversity seems very much related?
Dmitry Mozzherin
@dimus
@mjy yes, good point, i'll think about an abstract under this angle
Geoff Ower
@gdower
Sorry I missed your message, @dimus. I can still help edit tonight.
Dmitry Mozzherin
@dimus
@gdower I submitted an abstract for approval, we will be able to work on it further if it will be accepted
You should get an email with a link that will let you see and edit it in the future.
diatomsRcool
@diatomsRcool
looks like gnrd is down?
Dmitry Mozzherin
@dimus
something is wrong, it goes down and up, I did not have a chance to look what causes it yet
Dmitry Mozzherin
@dimus
@diatomsRcool got GNRD back, was a Kubernetes trouble :-/
Matthias Grenié
@Rekyt
Hello it doesn't seem that this Gitter is very active.
However, I have one question for which I don't see a clear answer to. What are the links between the Global Names Index and the Global Names Resolver? Is GNI the database that provides a backbone for GNR?
Because I'm using the taxize R package and it has different functions to access both services.
Debbie Paul
@debpaul
Hello Matthias, welcome! @dimus will have answers for you (and I'll learn in the process).
Dmitry Mozzherin
@dimus
There are 3 projects that are doing approximately the same thing: https://gni.globalnames.org, https://resolver.globalnames.org, https://verifier.globalnames.org
Matthias Grenié
@Rekyt
Wow thank you so much to both of you for your so quick answers!
Dmitry Mozzherin
@dimus
I do keep them all for now, because people have scripts that depend on them. However, when https://verifier.globalnames.org will get all functionality of other two, gni and resolver will be deprecated and removed after a "sunset" period.
Matthias Grenié
@Rekyt
@dimus how would define the contours between the 3 projects?
I'm trying to trace back the links between taxonomic databases that's why I'm asking.

I do keep them all for now, because people have scripts that depend on them. However, when https://verifier.globalnames.org will get all functionality of other two, gni and resolver will be deprecated and removed after a "sunset" period.

Oh! But I suppose it'll be a long deprecation period given that so many people are relying on it.

Dmitry Mozzherin
@dimus
gni is stale code and data-wise, however it has 'faceted' search that is not implemented in verifier yet
resolver adds fuzzy matching. Its code is stale, but data are updated reguarly
verifier is synced with resolver, but is about 100 times faster
From the moment when verifier is ready, I think I will set a year or so for people to adjust
and I will ask @scott to update taxize
Matthias Grenié
@Rekyt

verifier is synced with resolver, but is about 100 times faster

Woah that's really interesting :)
Do you consider it stable enough do be used in production already?

Dmitry Mozzherin
@dimus
I woud say yes, it can be used for production.
There are few things that have to be stabilized, for example, when I update database, I do shut it down for an hour and a half, but I try to do it during off hours for most users.
and it does not happen that often
Matthias Grenié
@Rekyt
Then for one-time queries that shouldn't disturb the access so much.
Dmitry Mozzherin
@dimus
For people who are comfortable with command line, there is https://github.com/gnames/gnverify
This would be my choice of using verifier
https://github.com/gnames/gnverify also allows to run web-interface locally
Matthias Grenié
@Rekyt
Alright! Thank you so much for the answers. And thank you for building this. It's really an unvaluable tool for scientists.
Dmitry Mozzherin
@dimus
thanks @Rekyt!
@debpaul is genty pushing me to start talking about new GN tools :)
Debbie Paul
@debpaul
Yes, I am @dimus 00 they are great tools! @Rekyt do you have a twitter account? May we loop you into our tweets?
Matthias Grenié
@Rekyt
It could be great to have this info written somewhere because I've looked up both on the GN website and on the GitHub wiki of Resolver and didn't find it.

Yes, I am @dimus 00 they are great tools! @Rekyt do you have a twitter account? May we loop you into our tweets?

Yes of course! My handle is @LeNematode

Dmitry Mozzherin
@dimus
I am wriging some info about gnparser as we speak, verifier will be next
So there will be updates at globalnames.org soon
thank you for another gentle push @Rekyt :)
Debbie Paul
@debpaul
Thank you @Rekyt -- great twitter handle!
Matthias Grenié
@Rekyt

Thank you @Rekyt -- great twitter handle!

Thanks!