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  • Oct 22 2018 21:12

    dimus on v4.0.3

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  • Oct 22 2018 21:12

    dimus on master

    v 4.0.3 gems update (compare)

  • Sep 18 2017 08:28

    dimus on v4.0.2

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  • Sep 18 2017 08:28

    dimus on master

    add span for resolution (compare)

  • Sep 17 2017 18:57

    dimus on master

    make rubocop happy (compare)

  • Sep 17 2017 14:24

    dimus on v4.0.1

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  • Sep 17 2017 14:24
    dimus closed #43
  • Sep 17 2017 14:24

    dimus on master

    Fix #43 partially The idea was… (compare)

  • Sep 14 2017 22:19

    dimus on 43-unify-resolution-injestion

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    dimus on 43-unify-resolution-injestion

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  • Sep 13 2017 22:02

    dimus on 43-unify-resolution-injestion

    Fix #43 unify injection and res… (compare)

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  • Sep 13 2017 21:26
    dimus opened #43
  • Sep 13 2017 20:20

    dimus on v4.0.0

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  • Sep 13 2017 20:20

    dimus on 42-better-eta

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  • Sep 13 2017 20:20
    dimus closed #42
  • Sep 13 2017 20:20

    dimus on master

    Fix #42 - better speed estimati… (compare)

  • Sep 12 2017 22:16

    dimus on 42-better-eta

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  • Sep 12 2017 21:46

    dimus on 40-concurrency

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  • Sep 12 2017 21:45

    dimus on 42-better-eta

    Fix #42 - better speed estimati… (compare)

Alexander Myltsev
@alexander-myltsev
ok, I understand
Dmitry Mozzherin
@dimus
We got our publication at Biodiversity Next https://biss.pensoft.net/article/35353/
Jonathan A Rees
@jar398
Is there a chat channel for the workshop?
Dmitry Mozzherin
@dimus
How about we use this channel
I think the workshop is totally legit for this room
Matt
@mjy
Why the CS link? Just here, right?
Link to workshop org - https://github.com/bhl-gn-workshop
Dmitry Mozzherin
@dimus
we want to steal some of the code the guys made
Matt
@mjy
I see.
We need the BHL table of serials as CSV, easiest way to get it?
?
Matt
@mjy
Didn't we have that data for the CS course?
OK, never minds, we poke at that starting point.
Dmitry Mozzherin
@dimus
Geoff Ower
@gdower
python -m grpc_tools.protoc -I. --python_out=. --grpc_python_out=. my_service.proto
Jocelyn Pender
@jocelynpender
I put what Dima helped me do in this new repo: https://github.com/bhl-gn-workshop/bhl-ner
David Shorthouse
@dshorthouse
Is http://bhlrpc.globalnames.org:80 up? FWIW, doesn't work from Holiday Inn wifi.
My bad; does work.

Is http://bhlrpc.globalnames.org:80 up? FWIW, doesn't work from Holiday Inn wifi.

@dshorthouse I wonder if it is also setting on the network, it works from here fine :-/

Dmitry Mozzherin
@dimus
these are visualizations of 190K BHL volumes, and names index
Jocelyn Pender
@jocelynpender
@dshorthouse Another approach to the geo parsing problem is an ensemble approach, combining results from several NER systems by a voting system: https://www.frontiersin.org/articles/10.3389/fdigh.2018.00002/full
Geoff Ower
@gdower
Joel Richard
@cajunjoel
@jocelynpender @gdower Falco OCR text (above)
Geoff Ower
@gdower
The Falco berigora was confusingly located in Falco.
Dmitry Mozzherin
@dimus
MITIE location person tagging sometimes it is right sometimes it is funny
David Shorthouse
@dshorthouse
Same in watson
Geoff Ower
@gdower
Here's output from the mordecai python package:
 >>> geo.geoparse("The Falco berigora was confusingly located in Falco.")
[{'word': 'Falco', 'spans': [{'start': 46, 'end': 51}], 'country_predicted': 'ITA', 'country_conf': 0.83302397, 'geo': {'admin1': 'Sicily', 'lat': '38.11706', 'lon': '15.07908', 'country_code3': 'ITA', 'geonameid': '6540054', 'place_name': 'Falcone', 'feature_class': 'A', 'feature_code': 'ADM3'}}]
David Shorthouse
@dshorthouse
Dmitry Mozzherin
@dimus
I think i like watson results a bit better than mitie results
David Shorthouse
@dshorthouse
They appear to be cleaner. But... somehow we have to get this locally. Apparently possible with Watson, but will require some high level conversations. Also need some actual entities like wikidata QIDs, which are not provided in Watson.
Jocelyn Pender
@jocelynpender
@dshorthouse @gdower @dimus @gdower
Joel Richard
@cajunjoel
Hi @debpaul
Debbie Paul
@debpaul
Debbie Paul
@debpaul
@dshorthouse I wonder if these tools might give you insights on how to relate the names (people, places, taxon) https://voyant-tools.org/
Dmitry Mozzherin
@dimus
http://opendata.globalnames.org/dumps/ has today's BHL OCR texts
Dmitry Mozzherin
@dimus
here is the github organization https://github.com/bhl-gn-workshop
should we start wiki on https://github.com/bhl-gn-workshop/info repo?
Geoff Ower
@gdower