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  • Aug 23 08:50
    xuzhougeng opened #101
  • Aug 21 15:10
    GuangchuangYu added as member
  • Aug 21 15:08
    GuangchuangYu added as member
  • Aug 21 15:05
    GuangchuangYu added as member
  • Aug 21 12:23
    GuangchuangYu added as member
  • Aug 21 10:26
    Siacm commented #241
  • Aug 21 06:01

    GuangchuangYu on master

    support phylog (compare)

  • Aug 15 15:36
    sharrax edited #249
  • Aug 15 15:34
    sharrax edited #249
  • Aug 15 15:34
    sharrax opened #249
  • Aug 14 12:33
    GuangchuangYu closed #248
  • Aug 14 12:33
    GuangchuangYu commented #248
  • Aug 14 08:56
    MichWeb75 opened #248
  • Aug 14 08:16
    MichWeb75 commented #148
  • Aug 14 08:11

    GuangchuangYu on master

    update geom_balance (compare)

  • Aug 14 07:18
    Adam-JJJJJ commented #245
  • Aug 14 07:16
    Adam-JJJJJ commented #245
  • Aug 14 06:35
    GuangchuangYu closed #247
  • Aug 14 06:35
    GuangchuangYu commented #247
  • Aug 14 06:34
    GuangchuangYu closed #246
sun010848
@sun010848
哪位有做单基因家族方面的WES? call CNV 用的顺手(靠谱)的是?
Guangchuang Yu
@GuangchuangYu
@GZhang2 trvrb/dynamics-practical#1 你见过这种情况么?
jiaolongsun
@jiaolongsun
so cools
Guangchuang Yu
@GuangchuangYu
Screenshot 2016-03-23 09.59.12.png
还能整合到blog上。
Lei ZHANG
@jameslz
这么酷~
Guangchuang Yu
@GuangchuangYu
/**
 * Get a list of states ordered by their indices.
 *
 * @return a list of states
 */
List<? extends State> getStates();
像这种加个?什么意思?
java
CasiaFan
@CasiaFan
通配符吧,用来代表State包里的所有的类
Guangchuang Yu
@GuangchuangYu

● <? extends T> 表示类型的上界,表示参数化类型的可能是T 或是 T的子类

● <? super T> 表示类型下界(Java Core中叫超类型限定),表示参数化类型是此类型的超类型(父类型),直至Object

找到一个解释了😬
Wei Shen
@shenwei356
Java这么复杂!!
Guangchuang Yu
@GuangchuangYu
can be any class that extends State
还算是容易理解,只不过之前没见过。
@shenwei356 go不复杂么?
Wei Shen
@shenwei356
还行吧。
当年被java高级用法吓到了
Guangchuang Yu
@GuangchuangYu
java就是太多规矩
Wei Shen
@shenwei356
go简单得太简单了。。
Guangchuang Yu
@GuangchuangYu
推荐一个terminal, tilda, https://github.com/lanoxx/tilda
非常爽
Guangchuang Yu
@GuangchuangYu
The specialities of Tilda are that it does not behave like a normal window but instead it can be pulled up and down from the top of the screen with a special hotkey.
Wei Shen
@shenwei356
drop-down terminal ~
Guangchuang Yu
@GuangchuangYu
Wei Shen
@shenwei356
duang~ 推荐最近写的一个CSV工具:csvtk -- Another cross-platform, efficient, practical and pretty CSV/TSV toolkit http://shenwei356.github.io/csvtk
Guangchuang Yu
@GuangchuangYu
牛逼!
@shenwei356 你可以用csvtk处理数据之后用管道给ggplot2直接生成图,加这样的例子,更加impressive的。可以用http://dirk.eddelbuettel.com/code/littler.examples.html
kaji331
@kaji331
大家好!
正在用Yu哥的包做GSEA分析就看到Yu哥的邀请邮件:)
kaji331
@kaji331
然而一个结果都木有得到>_<,做的三个实验组的多重检验,因此直接用每个差异基因在三组中平均值的SD(或者SD×2)来做的GSEA
Guangchuang Yu
@GuangchuangYu
welcome~
kaji331
@kaji331
我发现在做enrichKEGG的时候,虽然p和q都限定的1,但是minGSSize设的5…结果却显示了所有的通路,包括count<5的
ubuntu14.04下最新的R 3.2.5和最新的clusterProfiler
Guangchuang Yu
@GuangchuangYu
minGSSize卡的不是count,而是gene set size.
kaji331
@kaji331
哦,谢啦
Muyutianqing
@Muyutianqing
@GuangchuangYu
于哥,最近,我用了你开发的包clusterProfiler做GO和KEEGG注释,基因数在200左右,调参后发现没有富集到结果,有解决的方法么
Guangchuang Yu
@GuangchuangYu
没有结果也是一种正常的结果,并不能解决。可以看http://guangchuangyu.github.io/2014/08/why-clusterprofiler-fails/
biobabble.jpg
搞个公众号来玩一下
crisprucd
@crisprucd
Hi Guangchuang,
crisprucd
@crisprucd
I am learning to us your ChIPseeker package to analyze some of my Chipseq data. I used MACS2 to called the peaks and got the narrowPeak files. Can you let me how to lead the narrowPeak file into the ChIPseeker when you have time? Thank you.
Guangchuang Yu
@GuangchuangYu
@crisprucd narrowPeak file is also in BED format ans was supported. Just follow the vignette
Yingjie (Iris) Hu
@huyingjie
Rplot.png
Guangchuang Yu
@GuangchuangYu
Yingjie (Iris) Hu
@huyingjie
@GuangchuangYu Yes. It is fun.
Shicheng Guo
@Shicheng-Guo
Dr. Guangchuang Yu's github page is really awesome.
I will give up my current one and use your template and reprepare a similar one.