I had in mind to write up a couple of matlab functions to create reports of acquisition details contained in a BIDS data set. A bit like pybids does: https://github.com/INCF/pybids/tree/master/bids/reports.
I was tempted to add them to the BIDS start kit but I am not sure they would fit in there. So I was wondering if anyone knew of another repo where they could be more at home.
I was tempted to add them to the BIDS start kit but I am not sure they would fit in there. So I was wondering if anyone knew of another repo where they could be more at home.
(Tagging @Remi-Gau!)
We didn’t get around to documenting the useful functions in the wiki very well, so a new page in there might be helpful. But I’ll let you have a think about what you feel would be the best medium!
(I mean - the scripts are in the repo but the wiki might tell first visitors that they exist and what they do at a high level)
remi_gau Well I will write the gist of the code first and then add a brief descrition in the wiki I guess.
Hi everyone, does anyone know where I can find heudiconv documentation for BIDS use beyond the slide show at http://nipy.org/heudiconv
:+1: unfortunately the video doesn't describe the functionality we need. @Islast opened an issue so we'll see if the developers can help nipy/heudiconv#256
Can I get any information about GSOC'19 idealist at this place?
And any idea about the public chat platform specifically for GSoC(Google Summer of Code)?
I went through the article(https://www.nature.com/articles/sdata201644#introduction) on BIDS and understood the idea behind it and other things associated with it...
Would be happy to get guided on things I could do next!
Thanks in advance.
I'm not sure if this project will be part of GSOC next year.... @Park-Patrick - what do you think - would you recommend us running it again with a new student?
@dorahermes @emdupre @chrisfilo - what do you think too?
Hi @ankiitgupta7 @KirstieJane @dorahermes @emdupre @chrisfilo . Great to see there's interest for continuing this! A couple directions I can think of are improvements to the BIDS Apps section or institutional level conversion (i.e. direct scanner to PC). Happy to chat more with anyone interested about the project/program itself
Hello there again! I was asking about availability all the projects ideas in general for GSOC'19 at INCF. But due to no further information about it I went through the past projects at INCF randomly and got to know about BIDS. In the meantime, I fixed a basic issue(#72) just to get started(or get noticed!). Still open to continue with BIDS if assisted further and also if it's anyhow involved with any project in GSOC'19.
@KirstieJane Thanks for reply. Please go through the issue #72 again, and see if I have done it properly. Just wanted a feedback on that and also things I can touch upon next!
Hi, iEEG epilepsy researcher here. I wanted to ask about how to best annotate white matter and other channels that might not be part of your interest. Other examples include: out, csf, ventricle. Ideally there is a place to annotate this within the BIDS layout for iEEG data. This specifically comes up for SEEG (depth electrodes).
Currently iEEG-BIDS has "status", which is constrained to "good/bad", and status_description. Would this be the right data points to modify to account fo rhtat.
Hi @adam2392 I'm not an expert in iEEG, but you may find some useful info on the forum: https://neurostars.org/tags/bids. Otherwise some authors on the paper are active on the BIDS github as well