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SpeciesFileGroup/taxonworks

Workbench for biodiversity informatics.

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Repo info

Activity

18:29

jlpereira on development

Change size (compare)
18:26

jlpereira on development

Move sections to modals (compare)
18:13

LordFlashmeow synchronize #2597
17:43

hhopkins77 commented #2600
17:16

proceps commented #2600
16:56

hhopkins77 commented #2600
16:11

LordFlashmeow commented #2597
16:10

LordFlashmeow synchronize #2597
16:08

LordFlashmeow synchronize #2597
16:08

hhopkins77 edited #2600
16:06

LocoDelAssembly commented #2597
15:50

mjy commented #2597
15:47

proceps commented #2600
15:29

mjy opened #2605
15:27

mjy edited #2604
15:26

mjy assigned #2604
15:26

mjy opened #2604
15:25

mjy opened #2603
15:25

mjy opened #2602
15:25

mjy edited #2601

Tommy McElrath

@tmcelrath

Got it, thanks. That helps

Matt

@mjy

The "new" image preview/download options are nice @jlpereira, make snagging images out of the filter very easy.

José Luis Pereira

@jlpereira

yah

Tommy McElrath

@tmcelrath

First DWCA upload to Production (16 COs) here we go! [crosses fingers]

Hernán Lucas Pereira

@LocoDelAssembly

Remember you can import single rows to risk it even less ;)

Tommy McElrath

@tmcelrath

Boom!

Looks great!

Matt

@mjy

Heyhey! Now I can reference this in the talk. Thanks for teasing everything out everyone.

Hernán Lucas Pereira

@LocoDelAssembly

Would this be first import ever in production?

Matt

@mjy

Unless Sergei beat him to it.

Tommy McElrath

@tmcelrath

Shoot - was “locality” supposed to go to “verbatimLocality” in Collecting Event?

Because it did not

Hernán Lucas Pereira

@LocoDelAssembly

verbatimLocality is mapped to CollectingEvent.verbatim_locality. locality is not supported.

Tommy McElrath

@tmcelrath

Ah, there’s the rub/

Well - at least it’s only 16 records vs. 2000+

Hernán Lucas Pereira

@LocoDelAssembly

Tommy McElrath

@tmcelrath

yup, makes sense

Hernán Lucas Pereira

@LocoDelAssembly

Although not sure correct mapping for locality or if I should in fact use it in place of current mapping for verbatimLocality

Tommy McElrath

@tmcelrath

weirdly actually - in this case it was actually imported “correctly” because the labels themselves have no “verbatimLocality” but the data dump they provided me does?

Hernán Lucas Pereira

@LocoDelAssembly

locality doesn't look feasible to be mapped into geographic area if the text is supposed to be like in the example.

Tommy McElrath

@tmcelrath

I agree

I just missed it in this particular import

Matt

@mjy

We definitely need the top 5 gotchas

things like this

eventID required for unique CEs, etc.

Highlighting unsupported fields will also be key.

Tommy McElrath

@tmcelrath

Oh that would be great

Basically - “We read this as a column, but it won’t “go anywhere”"

Matt

@mjy

Then

"You can make it go somewhere if you treat it as a data attribute"

Hernán Lucas Pereira

@LocoDelAssembly

Correct, if your project has Predicates and custom attributes enabled with DwC-like URIs the importer will automatically insert them as data attributes for CollectingEvent and/or CollectionObject.

Tommy McElrath

@tmcelrath

Verbatim is misspelled in “new namespace task"

José Luis Pereira

@jlpereira

fixing

Matt

@mjy

Already fixed

on graph branch

José Luis Pereira

@jlpereira

meh, i pushed a fix on dev

Tommy McElrath

@tmcelrath

Is there any way to add documentation to a large number of COs quickly? E.g. I want to add a deed of gift document to a bunch of specimens from a specific accession

Matt

@mjy

@tmcelrath No. We discussed this workflow with Heidi re better tag options. Concept is to tag a set, then apply something to that set. Tag set/building improvements are understood. We could make a one-off task to do this pretty quickly if needed, it's just "Document all specimens in this tag set".

Tommy McElrath

@tmcelrath

@mjy @debpaul when is TW Together again? Wanted to announce at ECN - need it quick

Matt

@mjy

Dec. 6th - Dec. 10th.

https://github.com/SpeciesFileGroup/taxonworks_together_2021/

Tommy McElrath

@tmcelrath

Thanks - just announced at ECN Business Meeting

Matt

@mjy

Thanks much.

Debbie Paul

@debpaul

Yes! Thanks @tmcelrath

Dash

@LordFlashmeow

@mjy should predicate columns be included in the csv even if they have no data?

Matt

@mjy

If none have any data no

Dash

@LordFlashmeow

Ok, just checking

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