Where communities thrive


  • Join over 1.5M+ people
  • Join over 100K+ communities
  • Free without limits
  • Create your own community
People
Activity
  • 15:27
    joke1196 synchronize #2383
  • 15:27

    joke1196 on ui1521-tests-unavailable-iframe

    refactor: clean up try catch XXMerge branch 'ui1521-tests-un… (compare)

  • 14:48
    aledegano synchronize #2382
  • 14:48

    aledegano on publish_chart_on_merge

    chore(chart): template helm tes… Merge branch 'master' into publ… (compare)

  • 13:41
    RenkuBot labeled #2388
  • 13:41
    RenkuBot labeled #2388
  • 13:41
    RenkuBot review_requested #2388
  • 13:41
    RenkuBot opened #2388
  • 13:40

    mohammad-sdsc on renku-core-1.0.1

    chore: updating renku-core vers… (compare)

  • 13:21
    lorenzo-cavazzi synchronize #2383
  • 13:21

    lorenzo-cavazzi on ui1521-tests-unavailable-iframe

    chore(chart): template helm tes… Merge branch 'master' into ui15… (compare)

  • 12:39

    RenkuBot on improve-test-chart

    (compare)

  • 12:39
    RenkuBot closed #2386
  • 12:39

    RenkuBot on master

    chore(chart): template helm tes… (compare)

  • 10:40
    ableuler labeled #2386
  • 10:40
    ableuler labeled #2386
  • 10:40
    ableuler synchronize #2386
  • 10:40

    ableuler on improve-test-chart

    fix: pip upgrade to fix the pro… Merge branch 'master' into impr… (compare)

  • 10:18
    aledegano synchronize #2382
  • 10:18

    aledegano on publish_chart_on_merge

    (feat) Publish Helm chart on al… (compare)

Rok Roškar
@rokroskar
Hi @LudgerGoeminne_twitter sorry you're having trouble - can you let me know which project this is?
Ludger
@LudgerGoeminne_twitter
I already removed it, but I made a new one to demonstrate it: it's called "testproject2"
Rok Roškar
@rokroskar
Aha I see - I don't have access to that instance of renku - could you contact your support? It may be that one of the services needs to be restarted if this is a persistent problem
amirrezaie1415
@amirrezaie1415
image.png
Hello, by mistake I draged and droped two times my 300 files in the data folder. And for each file, the message in the image is shown. Is it possible to apply "Overwrite" once for all files? The same is also happening when I have large number of files (each of which are around 20 MB ) and for each file a message is popping up saying that "are you sure you want to upload your file :) "
Thanks!
amirrezaie1415
@amirrezaie1415

I have also another question. I am uploading one large file (1 GB) by just dragging and dropping in the data folder. Previous times that I had tried, there was a green progress bar showing how much of the data has been uploaded, but this time there is nothing! (The word "Complete" in the image below is because of the previous small file that I uploaded successfully!)

image.png

2 replies
Rok Roškar
@rokroskar
Hi @amirrezaie1415 I'm not really sure about using the JupyterLab interface for uploading a lot of files (or large files) - we recommend that you make a dataset either with the renku CLI or in the renku UI and use that to handle adding files to the project. The former requires you to have the renku CLI installed on whatever machine you want to data to your project from. If you go through the web UI, you can just drag and drop.
Melvin Wong
@mwong009
Hello, I tried importing a project that I have from Github, and everything seems ok. I have one small problem, my prject in Github has an existing requirements.txt file, when i do a renku init --force, it somehow overwrites the requirements.txt file and deleted everything in it.
Melvin Wong
@mwong009
to add on, the top-level .gitignore file was also replaced by a default one after renku init --force.
Rok Roškar
@rokroskar
hi @mwong009 - yes this needs some better docs - but the original files were put into a branch that you can restore them from. It should be called something like pre_renku_init_123456where the number at the end is the sha of the commit that was at the HEAD before you ran renku init --force
amirrezaie1415
@amirrezaie1415
Hello, I was wondering, by any chance, if it is possible to install and use python IDE's such as Pycharm within RENKU?
4 replies
Rok Roškar
@rokroskar
Tomorrow is another "Renku tea-time talks" session - we'll have a presentation about a really exciting new effort to automatically add ML-specific metadata to the knowledge graph automatically via a plug-in. It currently supports scikit-learn, keras and pytorch and requires very minimal changes to existing code, but allows the user to view information about model performance, data and parameters used, etc. via a few simple CLI commands. Please join us! The details can be found here: https://renku.discourse.group/t/renku-talks-ii-2020/175/3
waldorivier
@waldorivier
Hallo Team, is it possible to have an external access to a server running on a renku projekt instance ? thanks for your help! Waldo
7 replies
Damian Roqueiro
@droqueiro_gitlab

Dear Renku Team,
Thank you for all the work you put into the platform!
I posted a question a few days ago in the forum:
https://renku.discourse.group/t/renku-on-a-slurm-cluster/236

In summary, have you had experience setting up Renku on a Slurm cluster? Feel free to reply my post or contact me with a direct message.

Thanks in advance for your help. Damian.

Eric Pohl
@pohleric
Hello,
I would like to use Renku R Jupyter Notebooks for a course in geography. For this, I require the GDAL (https://gdal.org/) bindings from the "rgdal" package. I can install the rgdal package but cannot load it, which suggests to me that GDAL is not installed. I cannot locate gdal using the terminal. My question is thus: Is GDAL installed, and if so, where? And if it is not installed, would there be the possibility to install it?
14 replies
Mattias de Hollander
@mdehollander
Hi, I really like the Renku platform and how it combines data management with interactive analysis. Where can I find more information on resources you can use with it? I see the maximum size per dataset is 1 GB. Are there any limitations for the total amount of data (in different projects) you can store? And is there a maximum run time for an interactive environment? It would be nice to know this kind of things before using it at larger scale and advising it to other people. Thanks!
5 replies
Marc-Edouard Schultheiss
@marced_gitlab
Hello, I can't start a new environment on my project and can't understand why. The Docker image build failed. I tried to remove packages from the requirements but it does not change anything. Any idea how I can solve the issue ?
12 replies
meschultheiss
@meschultheiss
Hello ! My jupyterlab is freezing and I cannot interact with the CLI or save my notebook, or shut down a kernel. This is actually a recurrent problem but usually it unfreezes quicker.
Probable cause of the problem: I unsuccessfully tried to launch a voila visualisation of my notebook, which is maybe still running in the background but that I cannot stop. What can I do if I don't want to loose my work by simply closing the environment from renkulab ? (project MAPS, userid: marc-edouard.schultheiss). I tried to connect to my environment from another window but keeps loading and loading.
1 reply
James Runnalls
@jamesrunnalls_gitlab
Hi! I am trying to publish some HTML documentation using GitLab pages, but the "pages" functionality seems to be missing from the renku gitlab instance. Is this something that could be activated?
4 replies
Eric Pohl
@pohleric
I was wondering with another teacher if renku could host other applications like QGIS. Is that something that in theory would be possible?
16 replies
Erol Orel
@triphon:matrix.org
[m]
Hi there, the image is failing to build on my topic-modelling project. Two different error messages:
1) error: RPC failed; curl 52 Empty reply from server
2) error: RPC failed; HTTP 504 curl 22 The requested URL returned error: 504
tried few things already without success
git config --global core.compression 9
and try to clone and unshallow
no success
any idea? Thanks!
1 reply
Erol Orel
@triphon:matrix.org
[m]
yes Gavin!
done
Try to move everything to LFS and unshallowing again
I let you know when done
grr seems not working. I will try to fetch step by step using different values of depth
2 replies
Erol Orel
@triphon:matrix.org
[m]
Hi Gavin, Thank you for your help. Yes this is definitely a git problem. I will probably end up doing what you are suggesting :-) Thanks for helping!
Gavin Lee
@gavin-k-lee

Alternatively, you can "Revert" to a point in time when the CI/CD passed. The last time a commit worked was here: https://renkulab.io/gitlab/erol.orel/topic-modelling/-/commit/004ed41228aac54b3bd14f9f7aaab6cb4927e0fd

and after you did a merge, git was broken.

Mattias de Hollander
@mdehollander
I was wondering if it is possible to choose the R version when starting RStudio via RenkuLab? Currently it starts with R 4.0.0. Also I see that there are newer versions of RStudio that for example using renv as default in stead of packrat. There are Rocker images support the latest R and RStudio versions. Are there any plans to update the Rocker version in RenkuLab and (even better) let the end user choose the R version? I looked at github for open issue, but did not find any. Thanks!
12 replies
Aaron Spring
@aaronspring

Hi,
I work on https://renkulab.io/projects/aaron.spring/s2s-ai-challenge-template. I can create an environment, the docker image is available, but I cannot launch and the following error, which I do not understand. Working on AS_initial branch, but happens on all branches.

An error occurred when trying to start a new Interactive environment. Error message: "Renku API error", Stack trace: "o@https://renkulab.io/static/js/2.661f982d.chunk.js:2:2214652 a/<@https://renkulab.io/static/js/2.661f982d.chunk.js:2:4567 a@https://renkulab.io/static/js/main.32a029ec.chunk.js:2:16699 kt@https://renkulab.io/static/js/main.32a029ec.chunk.js:2:16969 Ga/</</<@https://renkulab.io/static/js/main.32a029ec.chunk.js:2:81568 “

6 replies
Aaron Spring
@aaronspring
how do you work in gitlab with/without notifications? I am very used to the github style in-browser notifications, which still does not work right? what are your workarounds? email notifications?
4 replies
Aaron Spring
@aaronspring
how is the best way to fork a project, make it private and clone a local version? Tried https://renkulab.io/gitlab/help/ssh/README#generate-an-ssh-key-pair ssh -T git@renkulab.io git@renkulab.io: Permission denied (publickey) working on this template: https://renkulab.io/gitlab/aaron.spring/s2s-ai-challenge-template/-/blob/master/README.md
13 replies
Aaron Spring
@aaronspring
I think I found a small error with the renkulab website. when I click on the number of forks in a renku projects, I get an error page. when I click on the number of forks in gitlab, I get the list of forks as expected.
4 replies
Luca Pegoraro
@lpego
Hey there, I have a question about authentication for Renku/Gitlab, is this the right place to ask?
10 replies
Aaron Spring
@aaronspring
Hi all, I’d like to run a short notebook in CI for merge requests. Is this possible? I have no experience with docker so far and started this MR: https://renkulab.io/gitlab/aaron.spring/s2s-ai-challenge-template/-/merge_requests/11/diffs Help appreciated.
11 replies
rezaulwre
@rezaulwre
Hi all, I have a renku project in which I added my team-members with a "Developer" status. But they can't access my project or script. Can anyone suggest me how to do that? Thanks, Muhammad
Rok Roškar
@rokroskar
heads up, the Renku team is hiring! See the discourse post for the details and feel free to reach out to me if there are any questions about the roles.
Pulktho
@Pulktho_gitlab
Hi all, unfortunately I can't login to my Renku/Gitlab account anymore. Same as @lpego, I get the Error 422. @rokroskar can you help me out?
6 replies
Aaron Spring
@aaronspring

Hi, since this storage setting of 16GB max was introduced (and I updated to renku=0.16 today), I cannot run this notebook anymore on renkulab.io: https://renkulab.io/gitlab/aaron.spring/s2s-ai-challenge-template/-/blob/master/notebooks/ML_train_and_predict.ipynb

Traceback:
...
Error updating the git index:
Error cleaning LFS object: write /work/s2s-ai-challenge-template/.git/lfs/tmp/210917465: no space left on device
error: packet write failed
error: external filter 'git-lfs filter-process --skip' failed
fatal: data/ecmwf_forecast-input_2020_biweekly_deterministic.zarr/t2m/0.0.0.0.0: clean filter 'lfs’ failed

exit status 128

The files I am pulling are less than 16 GB.

2 replies
Aaron Spring
@aaronspring
image.png
Tasko Olevski
@olevski
Hi Aaron do you know how much space you need for it?
I can add a 32GB option
Aaron Spring
@aaronspring
image.png
The data I want to pull (here on a different machine) is actually much less than 16 GB