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WhitakerLab/scona

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Jan 24 2021 17:35

Islast on master

Update CONTRIBUTING.md Update CODE_OF_CONDUCT.md Merge pull request #155 from sh… (compare)
Jan 24 2021 17:35

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Aug 09 2020 13:00

KirstieJane on gh-pages

[ci skip] Autodoc commit for . (compare)
Aug 09 2020 12:57

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replace deprecated networkx att… Revert "replace deprecated netw… replace deprecated networkx .no… and 8 more (compare)
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Kirstie Whitaker

@KirstieJane

So faster so long as there haven't been any changes :smile:

You can also alter the link to point to your fork of the repository and a specific branch if you'd like to (before these are merged to master for example)

https://mybinder.org/v2/gh/`REPO_OWNER`/scona/`BRANCH`?filepath=tutorials%2Fglobal_measures_viz.ipynb

And you can change the file path to point to a different jupyter notebook if you'd like to too :smile:

Ruslan Yermakov

@wingedRuslan

Thanks for the info :smile:

Ruslan Yermakov

@wingedRuslan

Morning, @KirstieJane

Sorry, I missed your comment on the wingedRuslan/scona#5 to merge nilearn

Heya! I didn't manage to get the update on how to save the file into the tutorial - would you mind having a bash at adding that please?
Thanks @wingedRuslan - this can be merged!

Sure! What would you like to add?

Could you please what you mean here?

the update on how to save the file into the tutorial

Kirstie Whitaker

@KirstieJane

Morning @wingedRuslan! A little further up the thread you wrote out how to save a ConnectomeView as an html file. That’s the content that isn’t in the tutorial at the moment.

So it would be great if you could add that into the tutorial - wherever you think makes sense 😊

Ruslan Yermakov

@wingedRuslan

okay, sure, I will add!

Ruslan Yermakov

@wingedRuslan

@KirstieJane, I've updated my blog post and it is ready to be reviewed :)

In the comments, I have also included rendered html page.

I added the scona description and project's goals from the list of INCF projects , where you put scona to be the project for GSoC

Ruslan Yermakov

@wingedRuslan

@KirstieJane, what about the plot_connectome in the nilearn tutorial? I've noticed you did not include this function to the tutorial

Kirstie Whitaker

@KirstieJane

Yes - that needs to go across to the anatomical tutorial :)

Sorry - I thought I'd commented on that but I must have forgotten :grimacing:

Ruslan Yermakov

@wingedRuslan

Ohhh, okay :)

Ruslan Yermakov

@wingedRuslan

Morning @KirstieJane

Could you please have a look at the issue #149 ?

it is about view_corr_mat

Ruslan Yermakov

@wingedRuslan

@KirstieJane thanks for the feedback!

I've added a few more comments to the issue #149

and while writing, I realized that the only improvement we could have with using seaborn.heatmap is just a better colorbar

so if you want to stick to the old version, it is fine :)

Ruslan Yermakov

@wingedRuslan

@KirstieJane, could you please also give me your feedback on the following issue #150 ?

Ruslan Yermakov

@wingedRuslan

it is about get_anatomical_layouts function

Ruslan Yermakov

@wingedRuslan

@KirstieJane, I am pinging you to let you know that merge conflicts in PR #145 are resolved :smile:

Ruslan Yermakov

@wingedRuslan

@KirstieJane, I've opened a new PR, so I was able to add the link to this PR in my final report

but I also noticed that I wanted to add a link to the interactive tutorial in Binder

but that PR (with tutorial) is not merged right now

what should I do?

Kirstie Whitaker

@KirstieJane

Hey @wingedruslan! Ive approved PR #145 a go for it!!

Tag me here when your report is ready to go and I’ll click the merge button (updated to the website can only be merged by me)

Ruslan Yermakov

@wingedRuslan

Hi @KirstieJane !

Yeah :sparkles: :rocket: PR is merged! Thanks :heartbeat:

And I am also pinging you to let you know that my report is ready to be merged too!

Kirstie Whitaker

@KirstieJane

Amaaaazing!

Let me get that merged now

Ruslan Yermakov

@wingedRuslan

:blush:

Kirstie Whitaker

@KirstieJane

Done!! Should appear online soon

Ruslan Yermakov

@wingedRuslan

Fantastic! Thank you :relieved:

Kirstie Whitaker

@KirstieJane

https://whitakerlab.github.io/blog/Ruslan-Final-Report-GSoC19/

Ruslan Yermakov

@wingedRuslan

ps. it is already there

Kirstie Whitaker

@KirstieJane

Ready to submit! Great job!

Ruslan Yermakov

@wingedRuslan

:innocent:

Ruslan Yermakov

@wingedRuslan

@KirstieJane, by permanent link, you mean the link I have to submit while filling in the final evaluation?

You can navigate to the .md file that is your report in the GitHub repository and if you press y the url in the browser will change to the specific commit. That’s the most specific and permanent link.

Work Product Submission Guidelines

Ruslan Yermakov

@wingedRuslan

I want to make sure that the link I am going to submit is okay

1) https://whitakerlab.github.io/blog/Ruslan-Final-Report-GSoC19/