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  • Jan 24 2021 17:35

    Islast on master

    Update CONTRIBUTING.md Update CODE_OF_CONDUCT.md Merge pull request #155 from sh… (compare)

  • Jan 24 2021 17:35
    Islast closed #155
  • Jan 24 2021 17:34
    Islast commented #155
  • Jan 24 2021 17:34
    Islast commented #156
  • Jan 24 2021 17:33
    Islast closed #156
  • Dec 20 2020 05:11
    kadambinipanda commented #156
  • Dec 16 2020 11:39
    kadambinipanda edited #156
  • Dec 16 2020 11:39
    kadambinipanda opened #156
  • Oct 06 2020 20:44
    shruti1421 commented #155
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    shruti1421 opened #155
  • Oct 02 2020 15:11
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  • Aug 09 2020 13:00

    KirstieJane on gh-pages

    [ci skip] Autodoc commit for . (compare)

  • Aug 09 2020 12:57

    Islast on master

    replace deprecated networkx att… Revert "replace deprecated netw… replace deprecated networkx .no… and 8 more (compare)

  • Aug 09 2020 12:57
    Islast closed #154
  • Aug 09 2020 12:51
    Islast synchronize #154
  • Aug 09 2020 12:48
    Islast opened #154
  • Jan 27 2020 16:09
    Islast synchronize #153
  • Jan 15 2020 20:35
    Islast synchronize #153
Ruslan Yermakov
@wingedRuslan
and no, there is no other field or place where to include the 2nd link
so, I will just submit the 1st link (the one to my blog post on the whitakerlab website)
@KirstieJane, thanks!
Have a nice weekend :relaxed:
Kirstie Whitaker
@KirstieJane
Great stuff! You too!
Ruslan Yermakov
@wingedRuslan
@KirstieJane, did I miss the meeting??
Kirstie Whitaker
@KirstieJane
Oh no!!
That's me not being able to type in 24 hour clock
It's supposed to be 17:00
Ruslan Yermakov
@wingedRuslan
ohhh, good :)
Kirstie Whitaker
@KirstieJane
:relieved:
Ruslan Yermakov
@wingedRuslan
Hi team!
I am really really determined to merge these 2 PRs #140 and #151 into master in the next 2 weeks
Ruslan Yermakov
@wingedRuslan
last 3 weeks I was kinda offline as I was visiting my grandparents and spent some time with family before starting my master degree
@KirstieJane is there anything I can help with the review of #140 ?
Kirstie Whitaker
@KirstieJane
Hi @wingedRuslan! This week is kind of a write off for me - I have a big deadline on 24 September. But I should be able to find some time after that! Can you ping me on Wed 25??
Ruslan Yermakov
@wingedRuslan
@KirstieJane, yep, I will! Good luck with the deadline ;)
Isla
@Islast
@KirstieJane do you think command line tools should run on relative or absolute paths?
eg if i'm passing a correlation matrix file cormat.txt to network_analysis_from_corrmat, would I rather be passing the relative or the absolute path to cormat.txt
Isla
@Islast
i have them set as relative paths right now
Kirstie Whitaker
@KirstieJane
@islaist - I think relative paths are the most intuitive to use
Should make the commands more interoperable across machines, right?
Whoops - @islast! Sorry for the typo 🌺
Isla
@Islast
okay, perfect we'll keep it relative
0I24N63
@congzhaoyang
Hello everyone, I put my data into datasets, and pip re installed scona, but it reported this error. What should I do

`

AttributeError Traceback (most recent call last)
in
----> 1 G = scn.BrainNetwork(network=M, parcellation=names, centroids=centroids)

D:\conda\lib\site-packages\scona\classes.py in init(self, network, parcellation, centroids)
64 if parcellation is not None:
65 # assign parcellation names to nodes
---> 66 self.set_parcellation(parcellation)
67 if centroids is not None:
68 # assign centroids to nodes

D:\conda\lib\site-packages\scona\classes.py in set_parcellation(self, parcellation)
153 :func:BrainNetwork.set_centroids
154 '''
--> 155 assign_node_names(self, parcellation)
156
157 def set_centroids(self, centroids):

D:\conda\lib\site-packages\scona\make_graphs.py in assign_node_names(G, parcellation)
54 # Assign anatomical names to the nodes
55 for i, node in enumerate(G.nodes()):
---> 56 G.node[i]['name'] = parcellation[i]
57 #
58 G.graph['parcellation'] = True

AttributeError: 'BrainNetwork' object has no attribute 'node'
`

hello
flammert
@flammert
I have the same issue. Probably because of some recent updates. More specifically, G.node got depricated, and is now G.nodes. see https://networkx.github.io/documentation/stable/release/release_2.4.html. Could this be changed in scona?
Isla
@Islast
Hi! I believe @flammert has it right, replacing references to .node with .nodes has been on the to do list for a while. I should be able to fix this over the weekend and also get back to you on some of your questions about how to arrange your data
Very excited to see some new users of scona :sparkles:
Isla
@Islast
Hey guys, I've merged a fix. Thanks for letting me know about this problem and, obviously, let me know if there are any more problems or points of confusion. We really appreciate hearing input from scona users :heart: