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biocompute-objects/TechnicalSteeringCommittee

The Gitter space for the TSC of the BioCompute Partnership, which is composed of BioCompute standard subject matter experts who serve as the leading authority in technical subject matter relating to the BioCompute standard.

People

Repo info

Activity

Hadley King

@HadleyKing

@nsoranzo see above

Hadley King

@HadleyKing

@/all FYI

Once I have those answers I think I can begin to split out the UI and API and we can get galaxyproject/galaxy#9077 in review!

I have moved the above pull request into review. It is a long set of functions and I think it will take a while so I figured I would get started on this process even if I am still waiting on a couple more answers

Nicola Soranzo

@nsoranzo

And with the help of John Chilton (Galaxy Core Team member), the above-mentioned PR has been merged and will be part of the next release of Galaxy (20.09) :tada:

Hadley King

@HadleyKing

This is great news @nsoranzo !!

Now we need to start a paper 😎

Jonathon Keeney

@kee007ney

And with the help of John Chilton (Galaxy Core Team member), the above-mentioned PR has been merged and will be part of the next release of Galaxy (20.09) :tada:

Huzzah!!

Hadley King

@HadleyKing

Notes for these meetings:
https://docs.google.com/document/d/1io5OBfsdEif_nWX-TmA22fz7gayHR1MsEwv2vI_QGBY/edit#heading=h.6bjl9u6w2m4t

Michael R. Crusoe

@mr-c

gitlab-org/gitter/webapp#676

Jonas Almeida

@jonasalmeida

I'd like to offer myself as a alfa-test member of the API users group :smiley:

If you are looking for a simple oauth2 service to govern it use here's a quick playground I wrote for a recent project: https://episphere.github.io/oauth

Jonas Almeida

@jonasalmeida

Quick summary of the API chat with Michael @mr-c just now: I think BCO's are under a gravitational pull towards facilitating engaging execution engines programatically. Instead of prescribing a mechanism, an alternative solution would be to enable an authorized API call mechanism through a bearer token in the same APIs that are public without them. I think once that mechanism exists people naturally look for ways to tie them to resources that have to be governed. Michael said this is a very crowded domain and we should thread carefully. I completely defer to him on that space, where CWL surely offers him a unique vantage point. I can only speak for the extraordinary short attention span of people looking for services they can trigger with a HTTP-REST calls :-) .

Michael R. Crusoe

@mr-c

Seems to overlap with GA4GH WES and related efforts there, yep

Nan Xiao

@nanxstats

Hi folks, following our discussions on Thursday, I have created a prototype that replicates biocomputeobject.org using Hugo: https://bco-public-website.netlify.app/

Source code: https://github.com/nanxstats/bco-public-website

Some notes on migration: https://docs.google.com/document/d/1S2C1G7EG--dJkRc-eJCmCwx-ptM7egVzgXtsyQfRKe4/edit?usp=sharing

Jonas Almeida

@jonasalmeida

Cool ! A fan of netlify here.

Hadley King

@HadleyKing

@nanxstats
BRAVO!!!

@carmstrong1gw

Hadley King

@HadleyKing

@/all This channel is now public!

Jonas Almeida

@jonasalmeida

This channel is now public!

:thumbsup:

Hadley King

@HadleyKing

@/all
https://biocomputeobject.org is now being served by https://github.com/biocompute-objects/bco-public-website

Michael R. Crusoe

@mr-c

Congratulations!

Hadley King

@HadleyKing

Feel free to submit PR to add or update content (Resources, events, etc)

https://biocomputeobject.org/leadership/#tsc

Nicola Soranzo

@nsoranzo

@HadleyKing I get the following error message in Firefox when trying to connect:
Web sites prove their identity via certificates. Firefox does not trust this site because it uses a certificate that is not valid for biocomputeobject.org. The certificate is only valid for the following names: *.netlify.com, netlify.com

Error code: SSL_ERROR_BAD_CERT_DOMAIN

Stian Soiland-Reyes

@stain

@nsoranzo I think Netlify has not enabled the certificate yet.. @HadleyKing said he would look at it with Chris. Unfortunately before we had http -> https redirects so many may have linked to that variant.. In the new hosting http://biocomputeobject.org/leadership/#tsc (http) does not yet redirect. And that reminds me to update my oldie picture there!

Hadley King

@HadleyKing

@ kkaragiannis I think you need to update your info...

@nsoranzo you broke the 'leadership' page. :-|

leadership.md to leadership.md2024
I fixed it back to leadership.md

Nicola Soranzo

@nsoranzo

Ops, sorry, must have typed in the wrong box! Sometimes the trackpad interferes with my typing :angry:

Hadley King

@HadleyKing

no prob. LOL

Hadley King

@HadleyKing

https://docs.biocomputeobject.org/
new documentation site.

John Torcivia

@syntheticgio_gitlab

Looks nice!

Hadley King

@HadleyKing

@/all
I started an agenda for tomorrow but please feel free to add or modify if you like
https://docs.google.com/document/d/1io5OBfsdEif_nWX-TmA22fz7gayHR1MsEwv2vI_QGBY/edit?usp=sharing

Hadley King

@HadleyKing

meeting link and agenda

https://docs.google.com/document/d/1io5OBfsdEif_nWX-TmA22fz7gayHR1MsEwv2vI_QGBY/edit

https://gwu.webex.com/meet/hadley_king

Stian Soiland-Reyes

@stain

New docs site looks very nice! Less intimidating to newcomers than dumping into GitHub. Some JSON blocks are with black background in my Firefox

some kind of dark vs light theme setting probably

Should expand https://www.biocomputeobject.org/leadership/#tsc to make a new TSC page that can link to minutes, this chatroom and so on

Jonas Almeida

@jonasalmeida

indeed, the site looks good :thumbsup:

Elaine Thompson

@eethomp

IEEE code of conduct https://www.ieee.org/content/dam/ieee-org/ieee/web/org/about/ieee_code_of_conduct.pdf

Michael R. Crusoe

@mr-c

CWL code of conduct https://github.com/common-workflow-language/common-workflow-language/blob/main/CODE_OF_CONDUCT.md as linked to from https://www.commonwl.org/#Code_of_Conduct

https://www.slideshare.net/carolegoble/the-swings-and-roundabouts-of-a-decade-of-fun-and-games-with-research-objects

Jonas Almeida

@jonasalmeida

Thank you for Carol’s slides, Michael @mr-c !

reference from Stian’s ongoing presentation: http://www.researchobject.org/ro-crate, https://www.nextflow.io

Elaine Thompson

@eethomp

Does anyone have connection info for the workshop? Eventbrite never sent it to me. Thanks!

Hadley King

@HadleyKing

@/all

https://www.biorxiv.org/content/10.1101/2020.12.07.415059

Nicola Soranzo

@nsoranzo

@HadleyKing Page not found?

Hadley King

@HadleyKing

https://www.biorxiv.org/content/10.1101/2020.12.07.415059v1

forgot the version at the end

Hadley King

@HadleyKing

updates to the Community page to reference TSC meeting.
https://www.biocomputeobject.org/community/

Chat via Matrix