Could someone be so nice and check if the 2 recipes modified in bioconda/bioconda-recipes#25508 (encyclopedia and mpa-portable) made it to biocontainers. As far as I can see this seems not to be the case https://biocontainers.pro/#/tools/encyclopedia
If there was some problem, how do we get those containers updated?
The biocontainers website doesn't seem to get updated very often
Hi, I am new to bioconda. I updated my recipe with this PR: https://github.com/bioconda/bioconda-recipes/pull/25576/ How long it takes to update anaconda? I am expecting build no 1 here. But Still it should 0. Any comments?
this is my tool. I created an wrapper "submission-tool-validator.py " to call that jar.
I created an conda environment: conda create --name submission-tool-validator-new -c bioconda submission-tool-validator
how can I ran the tool now?
I tried "python3 submission-tool-validator.py" and it didn't work
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Hi, if it comes to writing recipes I am quite a novice. Is use of git_url completely prohibited? In the guidelines it is stated as "Ideally". bioconda/bioconda-recipes#25584
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I am getting the following error at the linting stage:
ERROR: recipes/metabolabpy/meta.yaml:0: uses_matplotlib: The recipe uses `matplotlib`, but `matplotlib-base` is recommended
What is the recommendation?
@RJMW you can add a skip lint and keep matplotlib. https://bioconda.github.io/contributor/linting.html#skipping-a-lint-check
If you need qt then the best approach
Hi, could I please get a review for my PR? I've tried pinging BiocondaBot but haven't gotten a label so I figured I'd ask here bioconda/bioconda-recipes#25598
I tried copying the script files into
$PREFIX/bin, but it didn't work
Yeah, pip will put those in $PREFIX/bin for you
thanks!
I'm developing a software and I always do so with Bioconda in mind
but for this particular project I need a dependency that I can't put in conda-forge, even though the compiled library is in PyPI
PyPI has the compiled build