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  • Feb 10 16:55
    wasade commented #855
  • Feb 10 16:31
    guillaume-gricourt commented #855
  • Feb 10 16:19
    wasade commented #855
  • Feb 10 12:07
    guillaume-gricourt edited #855
  • Feb 10 12:04
    guillaume-gricourt opened #855
  • Jan 26 20:25
    MaryoHg commented #852
  • Jan 11 19:18
    wasade commented #854
  • Jan 11 14:59
    antgonza opened #854
  • Dec 02 2020 21:24

    wasade on master

    Maybe the builds work now? (compare)

  • Dec 02 2020 21:18

    wasade on master

    activate for running too (compare)

  • Dec 02 2020 21:14

    wasade on master

    docs to 3.7 (compare)

  • Dec 02 2020 21:11

    wasade on master

    bash (compare)

  • Dec 02 2020 21:06

    wasade on master

    kick (compare)

  • Dec 02 2020 21:02

    wasade on master

    try incubator (compare)

  • Dec 02 2020 20:48

    wasade on master

    using a different python (compare)

  • Dec 02 2020 20:22

    wasade on master

    asd (compare)

  • Dec 02 2020 20:20

    wasade on master

    not sure whats going on (compare)

  • Dec 02 2020 20:05

    wasade on master

    conda activate? (compare)

  • Dec 02 2020 19:52

    wasade on master

    env update to install (compare)

  • Dec 02 2020 19:47

    wasade on master

    Update not upgrade (compare)

Greg Caporaso
@gregcaporaso
i’m gonna go out for a pepsi perfect
Yoshiki Vázquez Baeza
@ElDeveloper
It's basically the same thing! Plus biom has power by default!!! unlike them hoverboards
Jai Ram Rideout
@jairideout
works for me, including tab-completion!
@gregcaporaso reminder to push the new docs to live site
Greg Caporaso
@gregcaporaso
oh, right, thanks!
Jai Ram Rideout
@jairideout
if anyone else wants to test out tab completion, run this line or add it to your .bashrc/.bash_profile:
Greg Caporaso
@gregcaporaso
ok, could someone confirm that it all works with python=2.7 too?
Jai Ram Rideout
@jairideout
eval "$(_BIOM_COMPLETE=source biom)"
works for me in py2.7!
Yoshiki Vázquez Baeza
@ElDeveloper
It twerks for me
oh sorry works
not twerks
bash autocomplete is plain magic
Jai Ram Rideout
@jairideout
:sparkles:
Greg Caporaso
@gregcaporaso
k, website is updated. can someone review/merge #678 to bump the version?
Daniel McDonald
@wasade
reviewing/merging
@jairideout, is there a good way to associate that with a specific env? not seeing anyway to have env vars specific to environments without manually modifying activate
merged
Jai Ram Rideout
@jairideout
not sure, it'd be cool if conda had a postactivate hook for stuff like this
Greg Caporaso
@gregcaporaso
i’m gonna send a note to the dev lists in a minute with tweetable link and some notes
Jai Ram Rideout
@jairideout
biom is using click's bash autocomplete support, see here for more details: http://click.pocoo.org/5/bashcomplete/
Jai Ram Rideout
@jairideout
@gregcaporaso here's the link to Jenkins' progress: http://ci.qiime.org/job/QIIME/979/console
Daniel McDonald
@wasade
@jairideout, ya, just wish there were easy hooks in conda as dropping something into ~/.bash_profile won’t work
…well, you could hack it i suppose. bash doesn’t actually care if the executable is present, would just need to precompute the completion scripts
Yoshiki Vázquez Baeza
@ElDeveloper
http://youtu.be/zcvbHJ1BZ9s
Greg Caporaso
@gregcaporaso
wow. those are going to change the world. i do have to ask: why was that hard?
all went well with the jenkins test against the 2.1.5 release, so i think we can check this one off. thanks again for all of the work on this @jairideout, @ebolyen and @wasade! :beers:
Greg Caporaso
@gregcaporaso
i did this to get my auto complete to work in my conda env
seems to be working
Evan Bolyen
@ebolyen
:beers:
Daniel McDonald
@wasade
@gregcaporaso, the issue with the activation script is that you can’t just put it into ~/.bash_profile or ~/.bashrc unless it falls after source activate <your_env_that_contains_biom>
Greg Caporaso
@gregcaporaso
it seemed to work for me - i was surprised. maybe i did something wrong and it’s actually not working
Daniel McDonald
@wasade
did you do it prior to an activate?
or following?
Greg Caporaso
@gregcaporaso
no, it’s working, but i don’t understand how
Daniel McDonald
@wasade
i mean in your ~/.bash_profile or something
Greg Caporaso
@gregcaporaso
i put the line in bashrc, log out, log back in, activate my env, and tab completion works
Daniel McDonald
@wasade
very odd
Greg Caporaso
@gregcaporaso
and biom is not available outside of my env
i guess click is just magic?
Daniel McDonald
@wasade
I get: "-bash: biom: command not found"
if i do it outside of an env
can you open a new terminal, not activate an environment, and send the output from which biom?
Greg Caporaso
@gregcaporaso
no output
Daniel McDonald
@wasade
that’s total voodoo unless it caches somewhere, but that doesn’t appear to be the case from testing
weird
thanks
Greg Caporaso
@gregcaporaso
sounds like that’s what it’s doing, from the description at the link i sent
Daniel McDonald
@wasade
the command source foo calls foo as though it were a program
click intercepts the call with a hook