These are chat archives for biojs/biojs

11th
Feb 2015
Sebastian Wilzbach
@wilzbach
Feb 11 2015 00:00
Here is the guide that I followed
I just requested the repository transfer on github.
I am really sorry about forgetting your component
The major change is that BioJS now makes extensive use of "npm"
so to install all dependencies one needs to run npm install
there is a nice script embedded to run a local server that simulates the BioJS registry - it is npm run w
rowlandm
@rowlandm
Feb 11 2015 00:19
OK. L have a look and see
I'll see how I go
Should have time tomorrow or next week
Sebastian Wilzbach
@wilzbach
Feb 11 2015 00:20
:)
just ping us if you have questions
tyreek
@tyreek
Feb 11 2015 00:33
(biojs-registry via irc) BioJS package update: biojs2galaxy to 0.0.5 by @greenify
tyreek
@tyreek
Feb 11 2015 01:33
(biojs-registry via irc) BioJS package update: biojs-sniper to 0.2.6 by @greenify
tyreek
@tyreek
Feb 11 2015 01:50
(biojs-registry via irc) BioJS package update: biojs-sniper to 0.2.7 by @greenify
tyreek
@tyreek
Feb 11 2015 01:55
(biojs-registry via irc) BioJS package update: slush-biojs to 0.7.3 by @BioJS
tyreek
@tyreek
Feb 11 2015 10:48
(biojs-registry via irc) BioJS package update: tnt.tooltip to 0.0.6 by @Miguel Pignatelli
Prasun Anand
@prasunanand
Feb 11 2015 13:15
@greenify Can you review the new UI once more. And then for TOC generation I'll revert the series files and _config.yml
tyreek
@tyreek
Feb 11 2015 13:24
(puppy via irc) I really like the idea of this project, I feel that I can contribute to this project, please guide me so that I can contribute to this project, Cheers!!
Shakeel Shafiq
@thirdknife
Feb 11 2015 13:35
I want to draw specific genes on a diagram chromosome using https://github.com/4ndr01d3/biojs-vis-chromosome has any one done that before?
tyreek
@tyreek
Feb 11 2015 14:32
(greenlion via irc) puppy: have a look at https://github.com/biojs/biojs/blob/master/CONTRIBUTING.md and dont hesitate to ask us if you have more questions or need help
Sebastian Wilzbach
@wilzbach
Feb 11 2015 14:35
@thirdknife : what do you mean by "on a diagram"? A chart? Can you state more details? Do you know about cyto-chromosome?
@prasunanand I commented on your PR. I hope this is helpful to you - I will merge it as soon as we have fixed the TOC issue ;-)
and yes the design got better :)
Prasun Anand
@prasunanand
Feb 11 2015 14:38
for more tutorials I 'll create dropdowns
improve the page link has been added
Shakeel Shafiq
@thirdknife
Feb 11 2015 14:39
@greenify yes I have checked this one, it just draws the chromosome, i also want to draw genes
with their numbers
Sebastian Wilzbach
@wilzbach
Feb 11 2015 14:39
@prasunanand Yes I saw that, but I asked you whether it makes sense to show this in the header, too
@thirdknife Okay and what was this "on a diagramm" about?
Shakeel Shafiq
@thirdknife
Feb 11 2015 14:43
if you see ensemble chromosome diagrams they also show the genes
Sebastian Wilzbach
@wilzbach
Feb 11 2015 14:51
Prasun Anand
@prasunanand
Feb 11 2015 14:53
@greenify I added the extra css in default.html because it was interfering with the new 'style.css'
Shakeel Shafiq
@thirdknife
Feb 11 2015 14:53
if you see the last diagram
Prasun Anand
@prasunanand
Feb 11 2015 14:53
Btw i'll make a new sync and correct my mistakes
:)'
Sebastian Wilzbach
@wilzbach
Feb 11 2015 14:54
@prasunanand you are amazing :)
Shakeel Shafiq
@thirdknife
Feb 11 2015 14:54
I have thought of adding by d3 myself, but I wanted to make sure if someone has done similar thing
Sebastian Wilzbach
@wilzbach
Feb 11 2015 14:55
@thirdknife so basically you want something like a "feature viewer" for the chromosome?
Shakeel Shafiq
@thirdknife
Feb 11 2015 14:56
yes kind of, and I want to specify my genes to just show them
not whole genes in that chromosome
Sebastian Wilzbach
@wilzbach
Feb 11 2015 14:56
but to clarify: you want to have multiple rows with your genes?
or a legend and then your genes?
Shakeel Shafiq
@thirdknife
Feb 11 2015 14:57
if my genes lies in p11 for example I will put them all under by putting a square braket
Sebastian Wilzbach
@wilzbach
Feb 11 2015 14:58
@thirdknife I can't follow :(
Shakeel Shafiq
@thirdknife
Feb 11 2015 14:58
ok let me explain again
let me draw and send that will be more clear
Sebastian Wilzbach
@wilzbach
Feb 11 2015 14:59
okay :) unfortunately I have to leave now , but will look at it later or maybe there is someone else online earlier
in any case I don't think that someone did what you want to achieve
Shakeel Shafiq
@thirdknife
Feb 11 2015 15:00
sure thanks!
Sebastian Wilzbach
@wilzbach
Feb 11 2015 15:00
and it would be awesome if you add that capability to an existing component
or if really needed creating a new one ..
Shakeel Shafiq
@thirdknife
Feb 11 2015 15:00
okay, then I will make it and contribute
Sebastian Wilzbach
@wilzbach
Feb 11 2015 15:00
(y)