These are chat archives for biojs/biojs

24th
Feb 2015
tyreek
@tyreek
Feb 24 2015 04:56
(biojs-registry via irc) BioJS package update: angularplasmid to 1.0.5 by Rehan Chawdry
Abhilash
@abhi3011
Feb 24 2015 05:26
@greenify hi, i have created a SNAP result viewer, it is still in beginning stage but have a look at it and please give suggestions that how to improve it the link is "https://github.com/abhi3011/biojs-vis-SNAPviewer"
Sebastian Wilzbach
@wilzbach
Feb 24 2015 06:04
@abhi3011: Wow that looks nice :). Where did you get the data from?
  • I would choose the color depending on whether a mutation at the position would be benign or not
  • I would show more detailed information on mouseover events instead of showing the info only on click (have you considered to use a tooltip instead?)
  • From a UX perspective the centering is totally weird, especially because one can't drag the residues - is this centering really needed?
  • your residues are not centered - have a look at "I"
  • Do you know drawrna?
Abhilash
@abhi3011
Feb 24 2015 06:39
hi @greenify thanks i will work on your suggestions, how can i make the chain drag? the data is just random but when finished i will use a proper sequence and get result from SNAP website
Sebastian Wilzbach
@wilzbach
Feb 24 2015 06:43
Have a look at this guide: http://bl.ocks.org/mbostock/6123708
Abhilash
@abhi3011
Feb 24 2015 06:59
ok I will work on it :smile:
Gustavo Salazar
@4ndr01d3
Feb 24 2015 08:05
@greenify the idea of io-rankings is pretty cool... from all the reading and writing on BioJS that i've been doing recently, my biggest concern is the lack of emphasis in the gold standards throughout the website, e.g. it is only the last article in the documentation... i think the rankings idea is a good way to push for the implementation of the standards. Here some of ideas fro the categories:
Gustavo Salazar
@4ndr01d3
Feb 24 2015 08:12
  • incomplete API documentation
  • no unit testing
  • no snippets
  • lack of events to interact with
  • no answering github issues
hehehe I put the last one for myself :blush:
tyreek
@tyreek
Feb 24 2015 12:19
(biojs-registry via irc) BioJS got a new package: biojs-vis-psicquic
tyreek
@tyreek
Feb 24 2015 12:46
(biojs-registry via irc) BioJS package update: biojs-vis-psicquic to 1.0.2 by José Villaveces
tyreek
@tyreek
Feb 24 2015 12:52
(biojs-registry via irc) BioJS package update: biojs-vis-psicquic to 1.0.3 by José Villaveces
tyreek
@tyreek
Feb 24 2015 13:17
(biojs-registry via irc) BioJS package update: biojs-vis-psicquic to 1.0.4 by jmVillaveces
Sebastian Wilzbach
@wilzbach
Feb 24 2015 14:29
@4ndr01d3: thank you so much for this input - I added all your categories to io-ratings and converted the json list to yaml so that it is easier to edit.