These are chat archives for biojs/biojs

1st
Aug 2017
rowlandm
@rowlandm
Aug 01 2017 12:18
Hi there! I'm not sure.
Have you seen the website at http://biojs.io?
shibuvp
@shibuvp
Aug 01 2017 12:18
ok i will check
rowlandm
@rowlandm
Aug 01 2017 12:18
Please let me know how you go!

Hi All,

The BioJS Community call will be on the 16th of August at 10am GMT+1.

Details are below. Zoom is the video conferencing tool that is free to download and install.

https://docs.google.com/document/d/10RSevhuwtYRhBUUD5aakViwDPvOuaA_i4C652bn7oE4/edit#

Hope to see you all there!

Regards,

Rowland

shibuvp
@shibuvp
Aug 01 2017 12:20
i'm looking for a browser which take bam file and vcf file as input
rowlandm
@rowlandm
Aug 01 2017 12:21
Are you looking for something like jBrowse functionality?
shibuvp
@shibuvp
Aug 01 2017 12:21
what is jBrowse?
rowlandm
@rowlandm
Aug 01 2017 12:22
It's like a UCSC genome browser that you can put into your website
I haven't used it though
I've only heard of it
Not sure if it's what you want
shibuvp
@shibuvp
Aug 01 2017 12:22
ya
rowlandm
@rowlandm
Aug 01 2017 12:23
I saw your github profile. I think you forked Mango
Have you tried it?
shibuvp
@shibuvp
Aug 01 2017 12:23
ok, i have already gone through it, but i couldn't input vcf
ya
i was tried mango
rowlandm
@rowlandm
Aug 01 2017 12:24
I see
shibuvp
@shibuvp
Aug 01 2017 12:24
but mango couldn't handle large sized vcf
rowlandm
@rowlandm
Aug 01 2017 12:25
I'm unsure how any javascript based code could handle large vcf files
shibuvp
@shibuvp
Aug 01 2017 12:25
yeh
rowlandm
@rowlandm
Aug 01 2017 12:25
I think you would need to do what UCSC do and call things via binary locations
the visualisation is actually the least of your worries
:/
If you have a bit of time, you could always browse through the Vizbi website to see if anyone else has done something....
Sometimes you find interesting projects there
shibuvp
@shibuvp
Aug 01 2017 12:26
is it possible to input vcf in it?
okey
rowlandm
@rowlandm
Aug 01 2017 12:26
I don't know
Sorry - I have to go. Good luck with your search. Let us know what you find!
shibuvp
@shibuvp
Aug 01 2017 12:27
ok sure
thanks