@/all, a general advice for the proposal - ideally you should be able to follow the timeline you lay out comfortable, that is, do not overcommit and try to have a buffer period at the end. We generally look for a minimum viable product (MVP) to be created by the end of the summer.
Mentors: Kai Blin, Simon Shaw
Can you plz help me in finding either of them
This is the link to my draft proposal.
People in this room are welcome to review.
Thanks
I am sharing the link to my draft proposal, reviews are appreciated. https://docs.google.com/document/d/1A_DhSOXuA_V1sxUm4hUJQsYKQrb-24aHoDrWcOgOJYM/edit#heading=h.sqttjpkwev5c
all the BioJS proposals I've seen so far have been good quality :heartbeat:
if anyone is awaiting feedback from me, please let me know!
@yochannah I have mailed my draft propsal to gsoc@secondarymetabolites.org (as mentioned at https://obf.github.io/GSoC/contact/).
But, there is no response from anybody so far.
What should I do???
I hope everyone hv submitted their final proposal. π
Even if it's not complete, I think we should submit our final proposal and the update it accordingly. π§π
Hi guys I am new here.Just used biojs. I have encountered some problems recently. is about how to do two sequence alignment by javascript. For example, mapping CDS to DNA. I tried some NW or SW algorithm on github. but it do not work. i konw in python it can be very easy to solve by use biopython. Can someone give some advice? Thank you!
@rkpattnaik780 I added a few comments to your PR
I'm asking it because I forgot it :) It's been a long time since I didn't add anything new.
Hey @IbrahimTanyalcin!
@yochannah will be able to provide you with a better help.
Till then you can check out https://edu.biojs.net/ as most of the tutorials are here only. (It'll soon be updated with our new gsoc project :D)
@yochannah will be able to provide you with a better help.
Till then you can check out https://edu.biojs.net/ as most of the tutorials are here only. (It'll soon be updated with our new gsoc project :D)
@IbrahimTanyalcin - this is probably the tutorial you're looking for https://edu.biojs.net/details/package_json/ - look at the snippets section. https://www.npmjs.com/package/mplexviz-ngraph has a good example
@yochannah ok, I pushed a new version , hopefully it'll get picked up. Just one question, I am guessing that the sniper field in package.json is for local development ? Because I presume you are internally converting
require statements like require("lexicon-mono-seq") into a valid url such as https://cdn.jsdelivr.net/npm/lexicon-mono-seq@1.2.4/lexiconMonoSeq.v0.17.3.js or whatever the main field of package.json is pointing at. Or am I completely wrong with my assumption (which means a build is rendered at your backend servers first)
this is actually kind of in flux at the minute! we've found that sometimes building components successfully can be really tricky (large packages often time out, for example, or poorly defined dependencies) so we're trying to encourage people to include build versions of their files. This will also make it possible for people to implement components using a CDN link and copy/pasting a couple of lines of code rather than having to buid a package (anyone who knows a little HTML can copy/paste and tweak a component config, whereas there is a lot more knowhow required to build an npm component).