These are chat archives for biom262/biom262-2016

16th
Feb 2016
thewilmergency
@thewilmergency
Feb 16 2016 02:12
Hi I don't think my S13_featurecounts file is right because my exercise 13 output table doesn't have the row mentioned in the assertion cell
Screenshot 2016-02-15 18.07.34.png
I'm trying to figure out where in the process I didn't get the right file. Here are my S13-relevant files
Screenshot 2016-02-15 18.09.28.png
thewilmergency
@thewilmergency
Feb 16 2016 02:36
Actually I might be okay.
Olga Botvinnik
@olgabot
Feb 16 2016 04:48
Was it a gtf issue?
thewilmergency
@thewilmergency
Feb 16 2016 04:48
what do you mean gtf issue?
Olga Botvinnik
@olgabot
Feb 16 2016 04:49
How did you fix it?
thewilmergency
@thewilmergency
Feb 16 2016 04:50
It's just that I thought my output was wrong bc I didn't see the assertion item in my first 5 rows
But then when I did .loc for the assert statement, I found it
I found a near match to the assertion statement.
Olga Botvinnik
@olgabot
Feb 16 2016 04:51
Ah got it
thewilmergency
@thewilmergency
Feb 16 2016 04:51
For many of my cells I'm just a little off in my final decimal spaces
Olga Botvinnik
@olgabot
Feb 16 2016 04:56
Yeah that's fine
Other people have had that problem
LElmen
@LElmen
Feb 16 2016 04:57
Hi Olga, I still have an output issue. I reran my s13_kallisto.sh script, but I get nothing in the processed data folder.
Screen Shot 2016-02-15 at 8.57.32 PM.png
Now I can't access the sh.err either
oups forgot to write nano
LElmen
@LElmen
Feb 16 2016 05:03
It's this very long error message again
Screen Shot 2016-02-15 at 9.03.33 PM.png
LElmen
@LElmen
Feb 16 2016 05:52
@olgabot Pls ignore... not sure what I've done but it works now.
Olga Botvinnik
@olgabot
Feb 16 2016 15:33
Yay!
@LElmen when you figure out something like the ssh-add thing, that's a really useful thing to put in your cheatsheets
LElmen
@LElmen
Feb 16 2016 18:29
Already done
:-)