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  • Mar 24 2016 17:46
    bmlewis-UCSD synchronize #107
  • Mar 15 2016 23:44
    apryan opened #130
  • Mar 15 2016 10:59
    anupriyatripathi opened #129
  • Mar 13 2016 21:14
    andersonbrookee synchronize #76
  • Mar 13 2016 21:12
    andersonbrookee synchronize #76
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    olgabot on gh-pages

    Travis build 368 pushed to Gith… (compare)

  • Mar 10 2016 05:10

    olgabot on gh-pages

    Travis build 367 pushed to Gith… (compare)

  • Mar 10 2016 05:09

    bioh4x on master

    Update index.jade (compare)

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    bioh4x on master

    Update index.jade (compare)

  • Mar 10 2016 05:05

    bioh4x on master

    adding new last lecture powerpo… (compare)

  • Mar 08 2016 17:35

    olgabot on gh-pages

    Travis build 365 pushed to Gith… (compare)

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  • Mar 08 2016 03:01

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    week10_mod1_updates (compare)

  • Mar 07 2016 00:05
    ohsamboss opened #128
  • Mar 04 2016 22:24

    olgabot on gh-pages

    Travis build 360 pushed to Gith… (compare)

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    pptx updates for week09 (compare)

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    bioh4x on master

    updating with powerpoints (compare)

  • Mar 03 2016 15:44

    olgabot on gh-pages

    Travis build 358 pushed to Gith… (compare)

Olga Botvinnik
@olgabot
or you can observe but can’t pinpoint the reason
LElmen
@LElmen
I'll try to run it again
Olga Botvinnik
@olgabot
ok great
LElmen
@LElmen
This isn't working. For s13 I got the long error message again, then I tried to re-run s10 naming the job s10again and it didn't create any output either, but the error was different.
Screen Shot 2016-02-12 at 3.39.50 PM.png
Olga Botvinnik
@olgabot
yay different error!
my favorite!
hmm does the folder ~/projects/shalek2013/processed_data exist?
did you make the soft link from scratch?
LElmen
@LElmen
yes, ls
Olga Botvinnik
@olgabot
can you show ls -lha ~/projects/shalek2013/
LElmen
@LElmen
Screen Shot 2016-02-12 at 3.42.52 PM.png
Olga Botvinnik
@olgabot
okay perfect
now can you show ls -lha ~/projects/shalek2013/processed_data
there’s something weird going on with permissions
LElmen
@LElmen
Screen Shot 2016-02-12 at 3.43.57 PM.png
Olga Botvinnik
@olgabot
oh right you have to cd first
cd ~/projects/shalek2013/processed_data
ls -lha
soft links are funny like that
LElmen
@LElmen
Screen Shot 2016-02-12 at 3.46.21 PM.png
Olga Botvinnik
@olgabot
wait someone else has been there
bmreilly
LElmen
@LElmen
I have an S10_kallisto folder from when we did this in class, but I'm not sure it is right. I can't do the S10_kallisto.shape
Olga Botvinnik
@olgabot
and they’ve made it so you can’t edit anything
LElmen
@LElmen
?
Olga Botvinnik
@olgabot
check out the permissions: -rw-r—r—
the first - means not a folder
then the first trio of rw- is for the user, who is bmreilly and can read-write-execute
then the next trio is “group” (tscc-group in this case) and the last trio is “other” (i.e. everyone else)
someone has messed with your folder
we need to get them to fix it
LElmen
@LElmen
Does bmreilly have red hair by any chance? Because the person that helped me remove the softlink I created that looped back to the same place, deleted the whole thing - since it linked to itself
Olga Botvinnik
@olgabot
I don’t know
it’s brian reilley
I’m emailing them now
ecwheele
@ecwheele
yes he does
Olga Botvinnik
@olgabot
if they used their account then it messes up yours
LElmen
@LElmen
He then copied his stuff so that I could get the harismendy files and follow in class
Olga Botvinnik
@olgabot
they need to use YOUR account to do things in your home
yeah that’s what happened
LElmen
@LElmen
This is a total laugh or cry moment (mostly laugh though)
Olga Botvinnik
@olgabot
yeah
I just emailed
hopefully that’ll get fixed soon :(
sit tight until then
:pray:
LElmen
@LElmen
It all started with that I made that soft link that linked to itself haha
Olga Botvinnik
@olgabot
hah :)
it’s all part of the learning process
ecwheele
@ecwheele
If you can't laugh at all your ridiculous fails in science you will never make it out of grad school! :)