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thewilmergency
@thewilmergency
Screenshot 2016-02-15 18.09.28.png
thewilmergency
@thewilmergency
Actually I might be okay.
Olga Botvinnik
@olgabot
Was it a gtf issue?
thewilmergency
@thewilmergency
what do you mean gtf issue?
Olga Botvinnik
@olgabot
How did you fix it?
thewilmergency
@thewilmergency
It's just that I thought my output was wrong bc I didn't see the assertion item in my first 5 rows
But then when I did .loc for the assert statement, I found it
I found a near match to the assertion statement.
Olga Botvinnik
@olgabot
Ah got it
thewilmergency
@thewilmergency
For many of my cells I'm just a little off in my final decimal spaces
Olga Botvinnik
@olgabot
Yeah that's fine
Other people have had that problem
LElmen
@LElmen
Hi Olga, I still have an output issue. I reran my s13_kallisto.sh script, but I get nothing in the processed data folder.
Screen Shot 2016-02-15 at 8.57.32 PM.png
Now I can't access the sh.err either
oups forgot to write nano
LElmen
@LElmen
It's this very long error message again
Screen Shot 2016-02-15 at 9.03.33 PM.png
LElmen
@LElmen
@olgabot Pls ignore... not sure what I've done but it works now.
Olga Botvinnik
@olgabot
Yay!
@LElmen when you figure out something like the ssh-add thing, that's a really useful thing to put in your cheatsheets
LElmen
@LElmen
Already done
:-)
LElmen
@LElmen
Can anyone give me a hint on how to slice off row 1 and get the index column set? I've tried various 'set_index', index_col = '0', print [1:46984
this is not supposed to be hard :-(
mbaughn
@mbaughn
skiprows=1
index_col is the other one
you can just specify the name of the column in single quotes
or put the column number
both seem to work
LElmen
@LElmen
I've tried both index_col and 'Geneid', ... it is maybe another problem alltogether.
Conall Sauvey
@csauvey
index_col didn't work for me until i included the skiprows first
mbaughn
@mbaughn
The assertion statement will also totally fail if your dataset is missing the last column like mine was… lol
LElmen
@LElmen
Because it doesn't understand that the second row can be a header I guess
I think most of my homework is a total fail, but I'll fight through what I can.
Conall Sauvey
@csauvey
^
LElmen
@LElmen
Thanx for the tips!
vwfu
@vwfu
@olgabot I completed exercise 6 last week, and just now noticed it's been modified, and my command has been moved up one cell I think... Do I need to redo the exercise? There's a new cell under Exercise 6 that just says: #MODIFIED ASSIGNMENT STATEMENT ABOVE
ecwheele
@ecwheele
@LElmen did you try including: comment='#' inside of pd.read_table()
LElmen
@LElmen
I think it was something else, I had to rerun the import pandas and those, restarted my login. This worked (see scrnshot)
Screen Shot 2016-02-16 at 9.50.33 PM.png
ecwheele
@ecwheele
Woo!!
LElmen
@LElmen
I learned some things about slicing and indexing in python trying to googleshoot the problem. :smile:
This forum has been great help!
ecwheele
@ecwheele
While sometimes incredibly frustrating... combing through the google responses is the best way to learn!
LElmen
@LElmen
Usually I end up learning something else than what I was looking for, but that sometimes comes in handy later on (oh, didn't I read that somewhere...)
Olga Botvinnik
@olgabot
@vwfu what changed?
vwfu
@vwfu
Screen Shot 2016-02-16 at 9.58.34 PM.png
Olga Botvinnik
@olgabot
Hmm was that after you merged changes?