bmpvieira on master
Refactor to add CLI 3.0.0 (compare)
bmpvieira on master
Refactor to add CLI 3.0.0 (compare)
dependabot[bot] on npm_and_yarn
Bump bl from 1.2.2 to 4.0.3 Bu… (compare)
dependabot[bot] on npm_and_yarn
Bump bl from 1.2.2 to 4.0.3 Bu… (compare)
bmpvieira on master
Hyperlink DOIs to preferred res… Merge pull request #5 from katr… (compare)
bmpvieira on master
Hyperlink DOIs to preferred res… Merge pull request #5 from katr… (compare)
bionode-ncbi download sra PRJNA183192
repeats the first SRA file, SRR629557.sra
until infinity
bionode-ncbi download
is very verbose by default (to pipe into other tools)
bionode-ncbi download sra --pretty PRJNA183192
to display a progress bar instead
jq
installed: bionode-ncbi urls sra PRJNA183192 | sed 's|.*url":"\(.*\)","uid.*|\1|' | xargs wget
heres mine from 2016 Bionode workflow engine for streamed data analysis
note the timeline ended up very different from what proposed. but its good to get an idea if student can organize a plan