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Repo info
Activity
    Curtis Rueden
    @ctrueden
    Just wanted to gush that this toolbox is soo awesome! I'm prepping workshop materials for Fiji at AQLM, and am looking forward to pointing students at this toolbox for some "power features."
    Curtis Rueden
    @ctrueden
    Unfortunately, I found a bug in Irregular Watershed. It complains:
    Exception in thread "Watershed Irregular Features Preview" java.lang.NoClassDefFoundError: ij/blob/ManyBlobs
        at Watershed_Irregular_Features.run(Watershed_Irregular_Features.java:222)
        at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:265)
        at ij.plugin.filter.PlugInFilterRunner.runPreview(PlugInFilterRunner.java:512)
        at ij.plugin.filter.PlugInFilterRunner.run(PlugInFilterRunner.java:447)
        at java.lang.Thread.run(Thread.java:745)
    Caused by: java.lang.ClassNotFoundException: ij.blob.ManyBlobs
        at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
        ... 5 more
    Because de.biomedical-imaging.ij:ij_blob is not available. Should that be part of the BioVoxxel update site?
    Jan Brocher
    @biovoxxel
    Hi Curtis,
    I recently also figured that out. I didn't realize about it because for me my bioimaging update site was active. The second parameter "convexity threshold" depends on ij-blobs. I tried to handle the dependency in the pom, but somehow it doesn't work. I will have a look into it to give a more precise description of what the problem is with the dependency and potentially come back to you or Thorsten Wagner from the bioimaging update site to solve that.
    Jan Brocher
    @biovoxxel
    btw... thanks for "promoting" the toolbox. recently, I actually also figured out some weaknesses (like some features are not working on stacks,...) so hopefully I will soon find the time to improve that. Whenever you feel there is another feature which should have my attention regarding improvement let me know. Feedback is always welcome.