PartitionFinder discovers optimal partitioning schemes for DNA sequences.
So I might have a little question, potentially easy to answer for you guys: I do have some mitochondrial data there, which I would like to figure out which partition to use for my BEAST analysis. How would you start doing this? I don't have a specific gene I'm interested in, but I could for example define certain regions of interest, but that would a totally random selection of myself... any proposition what I should maybe start doing instead ?
Talking about the definition of data blocks here, sorry if I'm not too clear