These are chat archives for cboursnell/transfuse

8th
Feb 2016
Jordi
@jordur
Feb 08 2016 09:22
hi all / @cboursnell . Please, could explain briefly how should I interpret obtained results from transfuse? I mean, finally I got a _cons.fa file, an --ouput file and some stats. As far as I know stats file seems to be from transrate final merged assemblies but the *_cons.fa file and final ouptut file look very similar.. Thank you
Chris Boursnell
@cboursnell
Feb 08 2016 09:26
After running vsearch to cluster the contigs from the input assemblies it generates consensus sequences from these clusters. These are in the *_cons.fa file. Then transrate is run again to filter out some low coverage contigs and that's your final file. There may not be any low coverage contigs found, in which case the cons file and your final output may be very similar.
Jordi
@jordur
Feb 08 2016 09:43
ok! Thank you!
Chris Boursnell
@cboursnell
Feb 08 2016 09:44
Hope that helps :)