These are chat archives for cboursnell/transfuse

20th
Oct 2016
Drew-Oli
@Drew-Oli
Oct 20 2016 08:54

Hi, trying to use transfuse package release but snap aligning is failing. Snap.log file: Loading index from directory... 3s. 613008609 bases, seed size 23
Aligning.
Welcome to SNAP version 1.0beta.18.

FASTQ file doesn't end with a newline! Failing. fileOffset = 11183410953, validBytes = 1191271125
SNAP exited with exit code 1 from line 252 of file SNAPLib/FASTQ.cpp
Loading index from directory... 4s. 613008609 bases, seed size 23
Aligning.
Welcome to SNAP version 1.0beta.18.

FASTQ file doesn't end with a newline! Failing. fileOffset = 11183410953, validBytes = 1191271127
SNAP exited with exit code 1 from line 252 of file SNAPLib/FASTQ.cpp Any advice on how to resolve this is greatly appreciated! Thanks