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  • Dec 10 2018 08:56

    wojdyr on gh-pages

    documentation: paragraph about … (compare)

  • Dec 10 2018 08:09

    wojdyr on master

    __version__ = '2.6.1' (compare)

  • Dec 10 2018 08:09

    wojdyr on v2.6.1

    (compare)

  • Dec 05 2018 10:51
    wojdyr commented on 6e7c2bf
  • Dec 05 2018 10:23
    wojdyr commented on 9306b36
  • Dec 05 2018 10:21

    wojdyr on master

    don't mark .pha as a temporary … (compare)

  • Dec 04 2018 18:08
    rjgildea commented on 6e7c2bf
  • Dec 04 2018 18:06
    rjgildea commented on 9306b36
  • Nov 30 2018 10:23
    wojdyr commented #11
  • Nov 30 2018 10:21

    wojdyr on master

    Set exitcode on phaser failure … (compare)

  • Nov 30 2018 10:21
    wojdyr closed #11
  • Nov 30 2018 09:11
    Anthchirp opened #11
  • Nov 30 2018 09:07
  • Nov 28 2018 12:32
    wojdyr edited #10
  • Nov 28 2018 12:32
    wojdyr commented #10
  • Nov 28 2018 11:08

    wojdyr on master

    flush logfile before a subproce… (compare)

  • Nov 28 2018 10:00
    graeme-winter edited #10
  • Nov 28 2018 10:00
    graeme-winter opened #10
  • Nov 19 2018 16:19

    wojdyr on v2.6.0

    (compare)

  • Nov 19 2018 14:53

    wojdyr on master

    for option --anode we need to r… (compare)

Marcin Wojdyr
@wojdyr
it's an experiment, but actually we don't expect a lot of chatting here
dunatotatos
@dunatotatos
Hello Marcin
I'm the dev of ContaMiner (http://strube.cbrc.kaust.edu.sa/contaminer)
And I'm trying to allow the visualization of the MoRDa results (one PDB and one MTZ file) online.
For that, I planned to use Uglymol, but I don't succeed in opening a MTZ file. Do I absolutely need to convert it to CCP4_map before? Or any plan to open the MTZ files in the web app?
Marcin Wojdyr
@wojdyr
Hi @dunatotatos ! I've been just looking yesterday into Contaminer!
I have a script that parsed contabase.xml and I noticed you moved to json, so yesterday I updated it to read json.
Regarding MTZ files, it's on the TODO list, and it's important, but I don't know when someone will finally implement it.
One of my ccp4 colleagues was thinking about giving it a try, I'll check with him today, but probably nothing changed.
Marcin Wojdyr
@wojdyr
So the work on reading mtz and making a map from the map coefficients - in JS - is to start soon. Hopefully. It can easily happen that it gets postponed.
dunatotatos
@dunatotatos
Hi @wojdyr . Thanks for your reply. And sorry for the unexpected change of format. I did not think that ContaMiner was already used to automatically retrieve data! (But that's a good news :smile: )
I'll see if I can help for the support of MTZ.
khanmu66
@khanmu66
Hi Marcin; I have SeMet Data of about 100 kDa protein containg 35 SeMet at 6.A. I was wonder can I use dimple to licate the heavy atom positions, if yes what column I need for and what is the commond for that. The molceular replcaemnt is not working I treid alot as It do not have any good template and the data is also not good regarding its resolution Max 4.9A.
Marcin Wojdyr
@wojdyr
@khanmu66 I'm afraid you need a different program. You could try Crank2 pipeline from CCP4 (although I don't know much about experimental phasing).
khanmu66
@khanmu66
Okay, thank you