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Activity
    Michael L Heuer
    @heuermh
    Does anyone still need to get to Familab?
    Paolo Di Tommaso
    @pditommaso
    I guess Fabien Campagne
    @heuermh btw who are you? :)
    Michael L Heuer
    @heuermh
    black t-shirt & beard!
    Heather L. Wiencko
    @HLWiencko
    There are two people here with black t-shirts and beards…you’re at a hackathon ;)
    three if you count the person who’s actually wearing navy, but it’s hard to tell!
    Paolo Di Tommaso
    @pditommaso
    :)
    Hervé Ménager
    @hmenager
    @HLWiencko @heuermh is longer beard
    ;)
    Heather L. Wiencko
    @HLWiencko
    I did eventually figure it out, I just thought it was a funny choice of descriptions
    Heather L. Wiencko
    @HLWiencko
    can the remote guys hear us okay?
    Phil Ewels
    @ewels
    the last few people not so much
    the current guy yes
    Heather L. Wiencko
    @HLWiencko
    Ok, it should get better from here, the last couple of us weren’t really facing the remote machine
    Hervé Ménager
    @hmenager
    not always, depends on the location
    Michael L Heuer
    @heuermh
    Topic list so far: Common Workflow Language (CWL)/Arvados, Nextflow, ADAM/Spark, MultiQC, Visualization/Structures
    Heather L. Wiencko
    @HLWiencko
    “workflows” is definitely the word of the day
    Chris Fields
    @cjfields
    definitely
    Michael L Heuer
    @heuermh
    Oh and BioPerl :)
    Chris Fields
    @cjfields
    Heh
    Heather L. Wiencko
    @HLWiencko
    there was a lot less biopython than I expected!
    and way more bioperl ;)
    John Fonner
    @johnfonner
    What was that last project? Too quiet to hear
    Chris Fields
    @cjfields
    NextFlowWorkbench-y stuff
    Heather L. Wiencko
    @HLWiencko
    Language Workbench technology?
    Michael R. Crusoe
    @mr-c
    John Fonner
    @johnfonner
    thanks
    Chris Fields
    @cjfields
    re: biopython, I know, was thinking Peter C was going to participate remotely
    Lorena Pantano
    @lpantano
    @ewels, do you have a list of things we can do in general for multiqc?
    Christian Brueffer
    @cbrueffer
    @HLWiencko Peter's not here, so I guess I'm in the minority ;-)
    Phil Ewels
    @ewels
    @lpantano: Absolutely! Modules here: https://github.com/ewels/MultiQC/milestone/6
    Lorena Pantano
    @lpantano
    nice!
    Phil Ewels
    @ewels
    That's the list of people that have requested already
    So would be good to add to it too if people have anything else that they want
    There are some others too - eg. smaller changes to your samtools module: ewels/MultiQC#251
    Heather L. Wiencko
    @HLWiencko
    so one of the reasons I was incuriated is because of what Brad mentioned — it might be easy enough to just put something together quickly for y’all
    Phil Ewels
    @ewels
    Absolutely - stuff like adding new submodules for Picard and samtools should be pretty quick to pick up
    Just a case of using an existing submodule as a template and adjusting it to understand a similar but different kind of output
    Heather L. Wiencko
    @HLWiencko
    Is there sample data for either of those that I can start with?
    Phil Ewels
    @ewels
    In data/modules/samtools or picard
    Heather L. Wiencko
    @HLWiencko
    nice
    Lorena Pantano
    @lpantano
    Heather, do you want to come here with us?
    Phil Ewels
    @ewels
    For samtools idxstats and flagstat anyway
    Lorena Pantano
    @lpantano
    yellow t-shirt guy
    Heather L. Wiencko
    @HLWiencko
    I should probably make the trek over, one sec
    Phil Ewels
    @ewels
    hah, sorry for giving you a new nickname @robinandeer ;)
    Should we move to https://gitter.im/ewels/MultiQC to stop spamming everyone else?
    Lorena Pantano
    @lpantano
    sure
    Robin Andeer
    @robinandeer
    @ewels it's fine ;)