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    Stian Soiland-Reyes
    @stain
    The logistics also say from 9am on the Thursday - and finish 18:00 on Friday
    Evanthia Kaimaklioti
    @code56
    many thanks for this. I am looking forward to it.
    Stian Soiland-Reyes
    @stain
    @chapmanb what can I use as academic citation for bcbio-nextgen? Just https://github.com/chapmanb/bcbio-nextgen ?
    Brad Chapman
    @chapmanb
    That would be perfect. We don't have a paper or pre-print, so the GitHub URL is perfect. I need to move it over to the bcbio organization but it'll redirect so that's all good.
    Stian Soiland-Reyes
    @stain
    great
    perhaps a quick submission to Journal of Open Source Software ..? :)
    Brad Chapman
    @chapmanb
    Thanks, we'd like to write up and publish at some point but just haven't prioritized it. Hopefully can be a slightly bigger paper with the work put into it.
    Stian Soiland-Reyes
    @stain
    I have the same problem.. but then writing bigger papers take more planning and effort. JOSS papers can be almost like abstracts, but hey, you get a old-school DOI with new-school double-open peer review and open source software.
    Here's one I reviewed about ReproZip: https://doi.org/10.21105/joss.00107
    so not much problem of double-publishing as a 'classic' journal paper would be significantly different
    there's a JOSS talk at BOSC :) by @pjotrp
    Martin Cech
    @martenson
    Does anybody know how it is with parking around the brmlab for codefest?
    Martin Cech
    @martenson
    ad parking: found this - https://brmlab.cz/place
    Brad Chapman
    @chapmanb
    Sorry Martin, missed your question earlier. I don't anything about driving there but sounds like it might be tricky. I've been planning on public transport.
    Martin Cech
    @martenson
    Galaxy folks plan to organize an informal event during the ISMB. If you are interested in getting together for a dinner please let us know by Friday: http://bit.ly/ismbdinnerpoll #usegalaxy
    Brad Chapman
    @chapmanb
    I'm looking forward to seeing everyone next week in Prague. I sent out an e-mail to everyone with logistics and planning: https://groups.google.com/forum/?fromgroups#!topic/openbio-codefest-2017/0QA1xxIIDKo Please ask if you have any questions at all.
    Farah Zaib Khan
    @FarahZKhan
    Thanks for sending the reminder Brad. I have added my name in the provided excel sheet as a participant in the code fest. Is there anything else needs to be done for registration? Cheers
    Michael R. Crusoe
    @mr-c
    @FarahZKhan Are you signed up for the mailing list?
    I guess this means you got your visa? So excited!
    Farah Zaib Khan
    @FarahZKhan
    @mr-c Just joined and still waiting for my passport :( I am very positive to get it either tomorrow or day after tomorrow :)
    Thanks for forwarding the link Michael
    Michael R. Crusoe
    @mr-c
    Dieta cros
    Wow, Thanks phone. "Fingers crossed" :-)
    Brad Chapman
    @chapmanb
    Farah -- that's all you need for signing up, we just try to track numbers for ordering food. Glad you're coming and looking forward to seeing you in Prague.
    Farah Zaib Khan
    @FarahZKhan
    Thanks Brad :) Yes I am also very excited as this will be my first time participating in Bosc and codefest. See you guys in Prague
    John Chilton
    @jmchilton
    The ideas sheet for the BOSC codefest has what they claim is a link to the workflow for the next DREAM challenge - https://www.synapse.org/#!Synapse:syn8507133/wiki/415976 - but I register and I still don't actually see workflows. Am I incompetent or are they not ready yet?
    Denis Yuen
    @denis-yuen
    Why not both? (j/k)
    The challenge isn't quite ready yet, I think that's the production site
    workflows under 3.3
    John Chilton
    @jmchilton
    True about it being both :D - let me rephrase that - "Is this just another example in a long line of examples of my incompetence or are they not ready yet?"
    Great - I requested access ;) - if I have time I'd like to get a running start on doing this for Galaxy for at the codefest if they are not ready in time though I can just fine some simple workflows to test since we don't run any CWL workflows yet :D
    Brad Chapman
    @chapmanb
    They're not quite ready but almost. Aiming for next week, but most things work (except I broke the bcbio one right before, fixing now). There is a Slack you can ping folks to give you access for testing: https://ga4gh-challenge.slack.com
    Denis Yuen
    @denis-yuen
    I think a couple of the workflows in the challenge are wdl, but I haven't tried that. But I'm guessing you're looking for a galaxy descriptor (?)
    John Chilton
    @jmchilton
    No - I want CWL descriptors - I just wanted to use these examples to guide my addition of CWL workflow support to Galaxy
    Denis Yuen
    @denis-yuen
    Ah cool
    Brad Chapman
    @chapmanb
    If you want bcbio ones, I have a small self contained test one here: https://github.com/bcbio/test_bcbio_cwl The GA4GH one is a bit bigger and is here: https://github.com/bcbio/bcbio_validation_workflows
    John Chilton
    @jmchilton
    @chapmanb I like self contained and small - thanks for the link that looks great! I'll open a PR to have Galaxy added to that list by the end of the ISMB :laughing:
    Brad Chapman
    @chapmanb
    Perfect, I look forward to testing it next week.
    rowlandm
    @rowlandm
    Hi all
    Michael L Heuer
    @heuermh
    I'll be arriving in Prague around noon tomorrow and my roommates don't arrive until later. Ping me here if you'd like to meet up.
    Michael R. Crusoe
    @mr-c
    Funny story: I haven't booked myself a hotel for tonight in Prague yet (but I have a room for the rest of BOSC/ISMB). Anyone with an extra bed/room?
    (Not an emergency, but thought I'd ask first)
    Brad Chapman
    @chapmanb
    mr-c, you could stay with @huerermh, Peter and I if you're stuck. We have an AirBnb so will have an extra bed/couch. heuermh gets in this afternoon but Peter and I don't arrive until after 9 tonight.
    Michael R. Crusoe
    @mr-c
    @chapmanb Oh, thanks! I arrive at 19:00. If none of the potential Airbnb hosts respond then I'll crash at with you all.
    Matúš Kalaš
    @matuskalas
    @mr-c I also have an extra bed in my AirBnb
    Dear all Codefest participants, I posted some useful arrival tips at https://groups.google.com/forum/#!topic/openbio-codefest-2017/MliuaDBdo_o See you in Brmlab on Thursday 9am!
    Brad Chapman
    @chapmanb
    Matus -- briliant, thanks so much for writing that up. Looking forward to seeing y'all tomorrow.
    Michael R. Crusoe
    @mr-c
    @matuskalas