Where communities thrive


  • Join over 1.5M+ people
  • Join over 100K+ communities
  • Free without limits
  • Create your own community
People
Repo info
Activity
  • 16:48
    sven6002 edited #12336
  • 16:46
    beeankha assigned #12338
  • 16:46
    beeankha labeled #12338
  • 16:46
    beeankha labeled #12338
  • 16:46
    beeankha labeled #12338
  • 16:45
    dholth milestoned #11640
  • 16:45
    sven6002 labeled #12338
  • 16:45
    sven6002 opened #12338
  • 16:37
    beeankha labeled #12336
  • 16:35
    beeankha labeled #12331
  • 16:29
    beeankha assigned #12274
  • 16:20
    jaimergp review_requested #12335
  • 16:20
    jaimergp ready_for_review #12335
  • 16:17
    jaimergp synchronize #12335
  • 16:17

    jaimergp on docker-conda-forge

    quiet undo branch filter (compare)

  • 15:57
    jaimergp synchronize #12335
  • 15:57

    jaimergp on docker-conda-forge

    eof fix again (compare)

  • 15:43
    jaimergp synchronize #12335
  • 15:43

    jaimergp on docker-conda-forge

    fix env var (compare)

  • 15:34
    dholth unlabeled #12214
mattalhonte-srm
@mattalhonte-srm
Heya! keeps trying to install different Python versions and then failing when it doesn't find some dep - example error: - nothing provides openssl >=1.1.1,<1.1.2.0a0 needed by python-3.7.1-h0371630_3
I explicitly put python==3.8.* (also tried it with a single = in my yaml file.
Not really sure what to do? Is there a reliable way to pin the Python version? Is there a reliable way to do detective work and see what package in my yaml file is responsible for this chain of events?
Thanks!
Stephen Nayfach
@snayfach
I updated my package checkv yesterday (https://anaconda.org/bioconda/checkv) but the new version (1.0.0) still is not available when I run conda install -c bioconda checkv. Is there something I did wrong when I updated the recipe?
1 reply
Dave Clements
@tnabtaf:matrix.org
[m]
We are pleased to announce that conda 4.14.0 & conda-build 3.22.0 releases are now available, featuring
⇒ rename conda environments
⇒ channel notifications
⇒ better error handling
⇒ and more!
Many thanks to all our contributors, especially the 14 new contributors who helped make this happen
Griffin Tabor
@gftabor

So I ran into this trying to update figure out the right workflow for my system
conda/conda#5821

So its clear what I want to do is not the "conda approved" workflow so I am trying to figure out the right method.

I have software repo A that provides a conda environment to run it. Then I have software repo B that uses repo A as a dependency but also adds a number of additional dependencies that are not needed for repo A.

It seems like what I would want is to specify a new environment in repo B that is something like "these dependencies plus whatever is in the repo A environment file" and for the package manager to solve for if that's possible (and it will be) and build me that environment. If its not possible it would throw and error just like it does if I make a single environment file that isn't possible, like asking for specific versions of packages that don't go together.

What is the suggested workflow for this? Would env update second_file.yaml work to add second set of dependencies?

Alan Hoyle
@alanhoyle
I installed a tool with micromamba on a CentOS 7 machine. The install worked fine, but when I try to run it, I get an error: ImportError: libffi.so.7: cannot open shared object file: No such file or directory I see libffi.so.6 in the system lib64, and libffi.so.8 in my ~/micromamba/lib (it's a symbolic link to somewhere else in the hierarchy). Is this most likely a problem with the conda package?
1 reply
Daniel Holth
@dholth
Hello condans
Jaime Rodríguez-Guerra
@jaimergp
:wave:
Pat Gunn
@pgunn
I'm wondering if people have hints as to how to debug when a package on a conda channel is not considered a candidate for installation (apart from the obvious "wrong arch")
Pat Gunn
@pgunn
This fails: conda create -n assimp_test -c flyem-forge -c conda-forge assimp=4.0.1 but I can see in the flyem-forge channel that there is a Linux package of assimp 4.0.1. Unclear how to debug further
4 replies
Pat Gunn
@pgunn
Weird. I can download the bz2 package and manually put it into an environment first, then build the rest of the environment. Wondering if this is some channel index issue
Jaime Rodríguez-Guerra
@jaimergp
There might be a CDN sync issue. Does it appear on the results of conda search?
1 reply
Dave Clements
@tnabtaf:matrix.org
[m]
Hi all, Minutes for the conda Community Call (starting in 10 minutes) are here
Jacob Barhak
@Jacob-Barhak
I am having issues with installing an old package on windows that used to install well and I can no longer install it - I wonder what is the problem - it used to work and no longer works. This is anaconda 2 based and uses python 2 yet it does no longer install even with an older anaconda - here is the command I am using conda install mist -c jacob-barhak - here is the error I am getting CondaMultiError: CondaHTTPError: HTTP 404 NOT FOUND for url <https://conda.anaconda.org/jacob-barhak/win-64/win-64\inspyred-1.0-py27_0.tar.bz2> - can anyone with a windows machine can try to verify this is what they get...
I looked the anaconda cloud and the file is there. see: https://anaconda.org/jacob-barhak/inspyred I changed it access to public yesterday since I though it will be a source for the error, yet it seems the problem is elsewhere now...
Jacob Barhak
@Jacob-Barhak
I located someone else who seemed to have a problem like mine and was no answered on stackoverflow: https://stackoverflow.com/questions/59335034/condahttperror-http-404-not-found-for-dask-core-2-7-0-py-0-tar-bz2
does anyone have any clue on why old packages cannot be located anymore?
Jacob Barhak
@Jacob-Barhak

I also tried conda install inspyred -c jacob-barhak separately - it seems the problem is with this specific package and it is either a conda error or a cloud flare error since there is CF message attached to the http error. Here is how it loos like:

Downloading and Extracting Packages
inspyred-1.0         | 78 KB     |                                                                              |   0%

CondaMultiError: CondaHTTPError: HTTP 404 NOT FOUND for url <https://conda.anaconda.org/jacob-barhak/win-64/win-64\inspyred-1.0-py27_0.tar.bz2>
Elapsed: 00:00.423906
CF-RAY: 74c04c37b9b174a1-LHR

An HTTP error occurred when trying to retrieve this URL.
HTTP errors are often intermittent, and a simple retry will get you on your way.

Is there a way to tell if this is a conda issue or a cloud flare issue?

1 reply
Dave Clements
@tnabtaf:matrix.org
[m]
Hi All, a draft conda Discourse Forum is now up. See GitHub for the announcement, and for the call for help. My hope is to make this live by the end of September. Please provide feedback in GitHub or here. Thanks.
Dave Clements
@tnabtaf:matrix.org
[m]
🚀 We are elated to announce the release of #conda 22.9.0, the first version following CEP 8 (Conda Enhancement Proposal) in our new bi-monthly release cycle.
Dave Clements
@tnabtaf:matrix.org
[m]
We are (also!) pleased to announce that the conda Community Forum is now open. Questions, answers, discussions, and news about the conda ecosystem. It is (or will be!) all here.
conda-bot
@conda-bot:matrix.org
[m]
@thath posted in Conda.org is comming and we want your help! - https://conda.discourse.group/t/conda-org-is-comming-and-we-want-your-help/99/1
conda-bot
@conda-bot:matrix.org
[m]
@SandeepAllampalli posted in CondaSSLError: OpenSSL appears to be unavailable on this machine. OpenSSL is required to download and install packages - https://conda.discourse.group/t/condasslerror-openssl-appears-to-be-unavailable-on-this-machine-openssl-is-required-to-download-and-install-packages/103/1
Dave Clements
@tnabtaf:matrix.org
[m]

Conda users: we want to hear from you! Complete a survey about your experience using conda, and enter a raffle for a chance to win a $150 Amazon gift-card.

The results of the survey will be summarized and published, and then used to help guide future directions for conda.

Interested in providing your feedback? Click here to fill out the survey and tell us your experience using conda.

Complete the survey before 11:59 pm EST on 11/16/2022 for a chance to win a $150 Amazon gift card. The winner of the raffle will be notified via email.

Thank you for helping to improve conda!

conda-bot
@conda-bot:matrix.org
[m]
@tnabtaf (Dave Clements) posted in Tell us how you use conda! - https://conda.discourse.group/t/tell-us-how-you-use-conda/113/1
conda-bot
@conda-bot:matrix.org
[m]
Martin K. Scherer
@marscher
Hi, I have an env.yaml containing a pip: section. These packages are being built as wheels prior creating the env (residing in /root/.cache/pip, e.g. Docker env). However during the creation of the env, pip ignores the cache and tries to build these again. Is there any way to force pip to use the cache?
conda-bot
@conda-bot:matrix.org
[m]
@tnabtaf (Dave Clements) posted in Conda-build 3.23.1 Released - https://conda.discourse.group/t/conda-build-3-23-1-released/123/1
Sylvain Corlay
@SylvainCorlay
New error messages for mamba!
Jannis Leidel
@jezdez
Huzzah! Thanks Sylvain!
Dave Hirschfeld
@dhirschfeld
:rocket:
Jonathan Ellis
@jbellis
mamba install --revision 1 finishes with "All requested packages already installed" and leaves me at revision 2. How to troubleshoot? (Am on Windows 10.)
conda-bot
@conda-bot:matrix.org
[m]
@tnabtaf (Dave Clements) posted in 🎉 Conda 22.11.1 Release - https://conda.discourse.group/t/conda-22-11-1-release/139/1
Leo Fang
@leofang
Hi guys, not sure if this is the best channel, can we get some attention on this issue (regarding conda-forge package info not updated on anaconda.org) please? Thanks! https://github.com/conda/infra/discussions/649
1 reply
conda-bot
@conda-bot:matrix.org
[m]
@tyler_wang (Hellcat) posted in how to build and install a self-made conda package - https://conda.discourse.group/t/how-to-build-and-install-a-self-made-conda-package/146/1
Julien Schueller
@jschueller
hello,
does anyone knows where CMAKE_ARGS is defined in conda-build ?
I do not seem to find anything in the sources.
I'm trying to figure out how to add flags for conda-forge/conda-forge.github.io#1859
2 replies
Jaime Rodríguez-Guerra
@jaimergp:matrix.org
[m]
So it's not conda-build defining it, but a package designed to export those variables upon environment activation, which conda-build triggers for the build and host environment during the building phases.
conda-bot
@conda-bot:matrix.org
[m]
@tnabtaf (Dave Clements) posted in Conda is now fiscally sponsored by NumFOCUS - https://conda.discourse.group/t/conda-is-now-fiscally-sponsored-by-numfocus/150/1
Nate Coraor
@natefoo:matrix.org
[m]
Hi all, I'm wondering if it's possible for root to use an unprivileged user's conda install without polluting that install with root-owned files. When another unprivileged user uses someone else's conda install, it seems to be clever enough to use ~/.conda for the pkgs and cache, but I don't see a way to force this for the case of root.
2 replies
Jaime Rodríguez-Guerra
@jaimergp:matrix.org
[m]
Ah, I see, you just want to execute the existing conda in some user's account, without adding root-owned stuff there... You can define temporary pkgs caches with CONDA_PKGS_DIRS. It might redownload things again, but it shouldn't touch the original pkgs location.
The "clever" approach to fallback to ~/.conda is out of necessity, I'd say. It doesn't change locations because it knows it's another user's property. It does it because it can't write there. By redefining CONDA_PKGS_DIRS (or adding a /root/.condarc with equivalent contents pkgs_dirs: [your_path]), you are mimicking this process, I think.
Is that somehow a compromise Nate Coraor ?
Nate Coraor
@natefoo:matrix.org
[m]
Yep, in fact that's what I'm doing: galaxyproject/ansible-miniconda#4 but I wasn't sure if there was another way to induce the "other unprivleged user" scenario directly.
2 replies
Jaime Rodríguez-Guerra
@jaimergp:matrix.org
[m]
Feyzaaaa
@Feyzaaaa
cannot import name 'BeatifulSoup4' from 'bs4' (/Users/feyzaerdogan/opt/anaconda3/lib/python3.7/site-packages/bs4/init.py) hatası alıyorum yardımcı olur musunuz?
3 replies
conda-bot
@conda-bot:matrix.org
[m]
@Angel_Picos posted in Install miniconda3 for windows - https://conda.discourse.group/t/install-miniconda3-for-windows/169/1
Lars Nilse
@lars20070
In the continuumio/anaconda3 Docker container I try to install the pyopenms package. But the package cannot be found in the bioconda channel. It is clearly there.
(base) root@61346253da63:/# conda install -c bioconda pyopenms
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - pyopenms

Current channels:

  - https://conda.anaconda.org/bioconda/linux-aarch64
  - https://conda.anaconda.org/bioconda/noarch
  - https://repo.anaconda.com/pkgs/main/linux-aarch64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/linux-aarch64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.
Jaime Rodríguez-Guerra
@jaimergp:matrix.org
[m]
Hi @lars20070 ! You are running Docker for aarch64, but the package is only built for linux-64 (amd64 aka Intel/AMD). Is this Docker on Apple Silicon? You can use --platform linux/amd64 in your docker run command to use arch emulation for linux-64.
Wolf Vollprecht
@wolfv
@lars20070 it also seems like you are missing the conda-forge channel