These are chat archives for dereneaton/ipyrad

Dec 2015
Isaac Overcast
Dec 23 2015 01:55
Question: I'm working on building up the paired end refmap functions, and i can't get the simulated pe-ddrad past step2(). Have you got PE past step2() yet? I can work on it if it's not working...
Deren Eaton
Dec 23 2015 17:53
Let me check. I had to change it so that R2 reads are revcomped before going into vsearch to check for merging. The non-merged R2 reads were probably coming out in the wrong config. I'll push changes today to get all data types through step2 correctly.