These are chat archives for dereneaton/ipyrad
if isinstance( samples, str ). I notice you don't do that and i've been trying to stick to your coding convention, but i slip up occasionally.
git describe, which i'm trying to use to make maintaining version number in ipyrad/init.py less stupid. We should make a solemn pact to only ever use
git tag -a <version_number
pip install -e .
binomprobr()function from consens_se.py.
1D0_734 TGCAGCCAATCAGATCGTGCAATTCACCGTAACCGATCCACATAATACCACACTTCCCCGGTTCTAAGAGAGCGGTGAAGGATGTCCCTCAGGGSSSSAATTGCCCTCCAGGGCTCATAACTGAAGGCGCCCTCGTTCATGCGCATTCGCCATCCTAACAGCACGGGCTGCCGATGGGTTTTTTTATCACTATGGGCT 3J0_88 TGCAGCCAATCAGATCGTGCGATTCACCGTAACCGATCCACATAATACCACACTTCCCCGGTTCTAAGAGAGCGGTGAAG------------------AATTGCCCTCCGGGGCTCATAACTGAAGGCGCCCTCGTTCATGCGCATTCGGCATCCTAACAGCACGGGCTGCCGATGGGTTTTTTTATCACTATGGGCT 1C0_269 TGCAGCCAATCAGATCGTGCAATTCACCGTAACCGATCCACATAATACCACACTTCCCCGGTTCTAAGAGAGCGGTGAAG------------------AATTGCCCTCCAGGGCTCATAACTGAAGGCGCCCTCGTTCATGCGCATTCGGCATCCTWACAGCACGGGCTGCCGATGGGTTTTTTTATCACTATGGGCT
cluster_withinis already doing a
vsearch --revcompright before that it explains why the merged R2 are on the correct strand, but reversed. I think the fix to this is to not revcomp r2 before --fastq_mergepairs, but instead to simply comp() R2, and let vsearch do the rev. I want to get your thoughts on this before i make any change here..