These are chat archives for dereneaton/ipyrad

29th
Jan 2016
Isaac Overcast
@isaacovercast
Jan 29 2016 00:16
Doing some sanity tests on assembly_name, about to close that ticket, but i figure it would be good to throw in a test on 'name' to make sure it doesn't have space or path delimiters '/'
Better to raise an error or carry on silently with assemblyname.replace(" ", "")
nvm, i'm erroring out. better to be explicit.
Isaac Overcast
@isaacovercast
Jan 29 2016 04:13
Step3 on real data takes a while, vsearch is destroying my megahertz. Do you have an estimate for time for step3 from pyrad on real sized date? Days and days right?
Isaac Overcast
@isaacovercast
Jan 29 2016 23:54
I uploaded an ipyrad package for linux to conda. Just got access to a juicy new untouched cluster, so i'm doing some benchmarking on a very beefy box, hoping for some significant performance improvement. will let you know how it goes.