These are chat archives for dereneaton/ipyrad

2nd
Feb 2016
Isaac Overcast
@isaacovercast
Feb 02 2016 17:58
Question: cluster_within:~190 There's this chunk of code:
                    for rseq in revs:                                                                                                                
                        idxs.append(max(\                                                                                                            
                            [i for i, j in enumerate(rseq) if j != "-"]))
Under what conditions would rseq be empty? I if rseq is empty the call to max fails, caught this during step 3 on full set of glenn's data.
Isaac Overcast
@isaacovercast
Feb 02 2016 18:22
What would be good behavior in this case? Catch the exception and pass? I'm still debugging it, trying to figure out which clust.gz file caused the problem.