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Interactive assembly and analysis of RAD-seq data sets
Feb 03 2016 01:22 UTC
Hmm, I'll check it out tom
I'm in the city interviewing till tomorrow afternoon. Gonna grab some drinks with a friend tomorrow night when I'm done. if you're free we should meet up.
So in other words, I probably won't check it out till Thurs.
Feb 03 2016 01:50 UTC
this gbs reverse hit stuff is such a pain.
what do you see if you catch the error and log print the offending alignment?
Feb 03 2016 01:57 UTC
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Feb 03 2016 02:01 UTC
It doesn't seem like an alignment should exist that raises that error, so we probably shouldn't just avoid it with a try statement. The problem must be upstream a little bit.
Feb 03 2016 02:02 UTC
Yeah, i'm rerunning step 3 on the offending samples, trying to narrow down the problem.
I'm projecting tomorrow night, probably be done around 9, be cool to meet up if it works. where you gonna be at?
Did you give yr job talk at Columbia today?
Feb 03 2016 18:21 UTC
Yeah, just finished!
I'll let you know later, I might not stay too late.
Feb 03 2016 18:58 UTC
Cool man, congratulations. Getting an interview is big. Good luck.
yeah hmu later if yr hanging out
Do you have an idea about workflow for pbs? Glenn wants to try ipyrad on the cluster and I haven't thought about how that would work yet.
Feb 03 2016 19:02 UTC
Yep. I'll put it in the wiki as soon as I have a chance