These are chat archives for dereneaton/ipyrad

3rd
Feb 2016
Deren Eaton
@dereneaton
Feb 03 2016 01:22
Hmm, I'll check it out tom
I'm in the city interviewing till tomorrow afternoon. Gonna grab some drinks with a friend tomorrow night when I'm done. if you're free we should meet up.
So in other words, I probably won't check it out till Thurs.
Deren Eaton
@dereneaton
Feb 03 2016 01:50
this gbs reverse hit stuff is such a pain.
what do you see if you catch the error and log print the offending alignment?
Isaac Overcast
@isaacovercast
Feb 03 2016 01:57
This message was deleted
Deren Eaton
@dereneaton
Feb 03 2016 02:01
It doesn't seem like an alignment should exist that raises that error, so we probably shouldn't just avoid it with a try statement. The problem must be upstream a little bit.
Isaac Overcast
@isaacovercast
Feb 03 2016 02:02
Yeah, i'm rerunning step 3 on the offending samples, trying to narrow down the problem.
I'm projecting tomorrow night, probably be done around 9, be cool to meet up if it works. where you gonna be at?
Did you give yr job talk at Columbia today?
Deren Eaton
@dereneaton
Feb 03 2016 18:21
Yeah, just finished!
I'll let you know later, I might not stay too late.
Isaac Overcast
@isaacovercast
Feb 03 2016 18:58
Cool man, congratulations. Getting an interview is big. Good luck.
yeah hmu later if yr hanging out
Do you have an idea about workflow for pbs? Glenn wants to try ipyrad on the cluster and I haven't thought about how that would work yet.
Deren Eaton
@dereneaton
Feb 03 2016 19:02
Yep. I'll put it in the wiki as soon as I have a chance