These are chat archives for dereneaton/ipyrad
_launchcommand doesn't appear to be long enough on HPC clusters, or at least not on the old dog I'm using right now. It took 28 seconds to spin up the connection :confounded:
I'm thinking again about whether different assembly method names would be more clear.
denovo_only both sound like they are just doing denovo.
Maybe the following four names would be more clear. The latter three all make it clear that they require a reference sequence.
2) reference (this is the former
3) reference_add (this is the former
hybrid, it adds denovo to ref)
4) reference_sub (this is the former
denovo_only, it subtracts denovo from ref)
What do you think?