These are chat archives for dereneaton/ipyrad

17th
Feb 2016
Isaac Overcast
@isaacovercast
Feb 17 2016 00:34
I think logging is broken, I'm not getting barely anything even in DEBUG, it looks like maybe only just the ipclients arent logging right, but i'm not 100% sure. Maybe it's just me... Are you getting lots of juicy log info in the log file still?
Isaac Overcast
@isaacovercast
Feb 17 2016 02:42
I switched the rtd default branch to master and default version to latest so the current versions of the docs are pushed.
Isaac Overcast
@isaacovercast
Feb 17 2016 03:28
rtd is actually pretty wicked fast in updating. I kind of love it.
Isaac Overcast
@isaacovercast
Feb 17 2016 04:35
draft full tutorial for CLI is in rtd: http://ipyrad.readthedocs.org/full_tutorial_CLI.html
Deren Eaton
@dereneaton
Feb 17 2016 06:00
Niiiiice. That looks sharp as hell.
Isaac Overcast
@isaacovercast
Feb 17 2016 06:16
Thanks. Finished CLI full tutorial more or less V1.0 (through step 7) http://ipyrad.readthedocs.org/full_tutorial_CLI.html
Deren Eaton
@dereneaton
Feb 17 2016 14:24
This looks cool. API for simulating data with ms in python: https://msprime.readthedocs.org/en/latest/api.html
Deren Eaton
@dereneaton
Feb 17 2016 17:12
I don't remember what the reason was for the os.chdir in __main__
but it causes a bit of a mess when running inside an IPython shell
I think maybe we can avoid chdir
oh, maybe it isn't causing the problem...
Deren Eaton
@dereneaton
Feb 17 2016 17:23
I guess that wasn't causing the problem. But I still wonder, what is it doing that it needs to chdir?