These are chat archives for dereneaton/ipyrad

14th
Mar 2016
Isaac Overcast
@isaacovercast
Mar 14 2016 01:34
Fixed the bug in refmapping that was fsck'ing the results. refmap on sim data now recovers exactly the same clusters as denovo. pushed to 0.1.77.
Isaac Overcast
@isaacovercast
Mar 14 2016 20:05
Have you seen this in step 6 at all? Step 6 finishes on glenn's data (with minor tweak)! But it's giving me this error, even tho it finishes fine and all samples are set to 6. Any thoughts?
  File "/home/iovercast/opt/miniconda/lib/python2.7/site-packages/ipyrad-0.1.76-py2.7.egg/ipyrad/core/assembly.py", line 1313, in step6
    randomseed], 45)
  File "/home/iovercast/opt/miniconda/lib/python2.7/site-packages/ipyrad-0.1.76-py2.7.egg/ipyrad/core/assembly.py", line 871, in _clientwrapper
    ipyclient.purge_everything()
  File "/home/iovercast/opt/miniconda/lib/python2.7/site-packages/ipyparallel/client/client.py", line 1840, in purge_everything
    self.purge_results("all")
  File "/home/iovercast/opt/miniconda/lib/python2.7/site-packages/ipyparallel/client/client.py", line 1831, in purge_results
    self.purge_local_results(jobs=jobs, targets=targets)
  File "/home/iovercast/opt/miniconda/lib/python2.7/site-packages/ipyparallel/client/client.py", line 1755, in purge_local_results
RuntimeError: Can't purge outstanding tasks: set(['8b3dca57-8593-4343-b185-9db41a564c3a', '34bd3c76-f73a-49c6-932b-be50892ad487'....
Deren Eaton
@dereneaton
Mar 14 2016 23:39
Hell's yeah for the refmapping. That latter bug, hmm, I think it means it crashed somewhere and then got to the purge arg in assembly without first aborting running jobs... Needs better exception handling to get the real cause.