These are chat archives for dereneaton/ipyrad

7th
Apr 2016
Deren Eaton
@dereneaton
Apr 07 2016 00:27
Isaac Overcast
@isaacovercast
Apr 07 2016 14:39
lol, we should just copy and paste the bars.py demo into the run() method for each step, looollll.
That looks cool tho
Deren Eaton
@dereneaton
Apr 07 2016 17:22
sorry I'm a bit slow on pushing these chagnes
big things coming tho
I've been hacking on refmapping all day
does smalt, samtools, bedtools, etc use the fastQ scores in any way currently?
cuz if not it seems like it would be way simpler to derep before doing the remapping.
Isaac Overcast
@isaacovercast
Apr 07 2016 17:25
samtools could be used to filter based on quality score, but we're not doing that currently
Deren Eaton
@dereneaton
Apr 07 2016 17:26
ok cool. I'm gonna try out a workaround then.
Isaac Overcast
@isaacovercast
Apr 07 2016 17:26
ok. gl. been closing some tickets this morning, but i have to go to class now, will work on it more later.