These are chat archives for dereneaton/ipyrad
samtools viewalways outputs sequence in forward orientation (the actual strand the hit came from is indicated in the results somewhere).
-c 1to ipyrad
wait 1it's harder to figure out where their coming from. More incentive to do better exception handling inside the called functions.
ImpossibleDependencyand reconcat is giving up. Seen this before? looks like an ipyparallel thing...