These are chat archives for dereneaton/ipyrad

Apr 2016
Deren Eaton
Apr 18 2016 15:11
I've got VCF output building with full depth. Seems to be working. Will have to test with more indels still. Let me know the status of reference methods and I'll start working on a way for that to get carried through to VCF. Since VCF is supposed to have info relative to a reference the reference output will be a bit different than for denovo, where I just pull the most common allele to create a pseudo-reference.
Isaac Overcast
Apr 18 2016 17:21
Sounds good... Ugh been off the radar for a couple days cuz this columbia class is kicking my butt, luckily after tomorrow I'll be done with basically everything, so i can put more time into ipyrad.