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Interactive assembly and analysis of RAD-seq data sets
May 04 2016 01:13 UTC
ugh, just found a nasty bug in step1. Fixing now.
May 04 2016 01:14 UTC
May 04 2016 02:25 UTC
not a bug, per se.
If you run step1 using the force flag, and there are files already in the fastq dir, it appends to the existing files, instead of replacing them. Which confused me. It should probably instead overwrite them.
May 04 2016 05:49 UTC
I seem to remember that we are now grabbing maxlen from the data directly, right? If so, we wouldn't need to multiply it X2 for paired data...
May 04 2016 22:28 UTC
Actually, yes i believe that is now true.